What is SHOGoiN

SHOGoiN Cell Database is a repository for accumulating and integrating diverse human cell information to support a wide range of cell research at the single-cell resolution. It is a significant extension of the world-first human cell database,CELLPEDIA (Database 2011). compass The database consists of several modules that store cell lineage maps, transcriptome, methylome, cell conversions, cell type markers, cell images with morphology data, and orthologous cells curated from public as well as contracted resources, based on sophisticated cell taxonomy.

What's new

  • Aug-01-2017

    • Database updated. Data in the sections Taxonomy, Transcriptome, Methylome, Cell Conversion, Cell Marker, and Image were cleaned-up and added.
    • Cell Lineage Map of S. purpuratus were newly opened.
  • Jul-01-2017

    • New SHOGoiN web page opened to public.
    • Database updated. Data in the sections Taxonomy (human and mouse), Transcriptome were added.
  • Jun-01-2017

    • Database updated. Data in the sections Taxonomy (human and mouse), Lineage Map were added.
  • May-01-2017

    • Database updated. Data in the sections Taxonomy (human and mouse), Marker, Transcriptome, Methylome, and Image were added.
  • Feb-01-2017

    • Database updated. Entries in Marker were added.

SHOGoiN assay data summary SHOGoiN assay data summary

New Data Selector (under development)

  • Animal
    All
    Human
    Mouse
  • Assay Type
    All
    Transcriptome (1424)
    Methylome (0)
    Cell Marker (2278)
    Image (1793)
  • Tissue Type
    All
    Brain (693)
    Early embryonic tissue (597)
    Blood (586)
    Eye (545)
    Muscle (342)
    Bone marrow (319)
    Pancreas (261)
    Genitalium (234)
    Adrenal gland (232)
    Stomach (192)
    Mouth (130)
    Small intestine (97)
      Show more



SHOGoiN Modules

Assay data modules
  • Easy Marker Search

SHOGoiN standards and Tools