SHOGoiN Cell Transcriptome: GSM1269183

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269183


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6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T189Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T48 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 114.7691
2 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 105.8994
3 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 66.3798
4 ENSG00000245532 NEAT1 nuclear paraspeckle assembly transcript 1 49.6305
5 ENSG00000115414 FN1 fibronectin 1 46.6402
6 ENSG00000113140 SPARC secreted protein acidic and cysteine rich 43.2459
7 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 40.3163
8 ENSG00000108821 COL1A1 collagen type I alpha 1 chain 35.5683
9 ENSG00000088448 ANKRD10 ankyrin repeat domain 10 34.3156
10 ENSG00000137801 THBS1 thrombospondin 1 32.2548

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
58735 ENSG00000285994 novel transcript, sense intronic to CAMK1D -0.0923
58734 ENSG00000285993 novel transcript, antisense to RNF165 -0.0923
58733 ENSG00000285992 novel transcript -0.0923
58732 ENSG00000285991 novel transcript -0.0923
58731 ENSG00000285990 neurobeachin (NBEA) pseudogene -0.0923
58730 ENSG00000285989 TEC -0.0923
58729 ENSG00000285988 novel transcript, LINP1-LINC00707 readthrough -0.0923
58728 ENSG00000285987 NA -0.0923
58727 ENSG00000285986 complement factor H related 3 (CFHR3) pseudogene -0.0923
58726 ENSG00000285985 NA -0.0923

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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