Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
Frequently Asked Questions (FAQ)
Q: What is the difference of SHOGoiN with other databases?
A: Our features are as follows.
1. The misidentification of cell types can be prevented by using the 5 factor ID code.
2. The ID code integrates five pieces of information: a) cell lineage map, b) transcriptome/methylome analysis information, c) cell conversion information, d) cell marker information and e) cell/tissue image information.
3. It is possible to integrate information quickly from other databases (Cellfinder, LifeMap Discovery™ and so on) into SHOGoiN by using the ID code.
Q: How frequently is SHOGoiN updated?
A: SHOGoiN is usually updated at the beginning of every month. See "What's new" and "Release notes".
Q: How can I download the SHOGoiN dataset?
A: The data can be found in "Data Downloads".
Q: How can I identify the similar cell types used for my research?
A: CELLBLAST was designed for this purpose.
Q: How can I get information on genes that may contribute to cell type differences using SHOGoiN?
A: GSEABoT was designed for this purpose.
Q: What does the term "SHOGoiN Cell ID" mean?
A: SHOGoiN Cell ID consists of Anatomy ID (22 digits) and Cell Type ID (3 digits).
Q: How can I submit data to SHOGoiN?
A: Please contact us at: shogoin-q(a)stemcellinformatics.org
