Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
Image : Cell Image ID 10
No.
SHOGoiN cell id
Image (Image ID)
Title
Sample
Method
Contact
Morphologic Feature
Note
1
3060205000102010000000-231
10
Large intestine:Smooth muscle cell:Human
Location
Large intestine
Age
Sex
Race
Disease
Cause Of Death
-
Date
2008.8.13
Condition
Embedding Mehtod
Paraffin
Staining Mehtod
Hematoxylin
Microscope
OLYMPUS DX51
Camera
OLYMPUS DP21
Image Size (pixels)
1200x1600
Resolution (ppi)
72
magnification
400
Person
Koji Yamanegi
E-mail
yamanegi@hyo-med.ac.jp
Telephone
0798-45-6432
Fax
0798-45-6431
Affiliation
Department of clinical pathology, Hyogo collage of medicine
Address
1-1, Mukogawa, Nishinomiya, Hyogo
Cell
Nucleus
Nucleus/Cell
Area
698.5
131
Area ratio
0.19
Circularity
0.37
0.75
Eccentricity1
0.2
Convex area
1064
3462.35
Eccentricity2
0.18
Bending energy
3.73
155
Eccentricity3
0.67
Elliptic long axis
34.51
18.41
Eccentricity3
0.67
Inertia moment
103481
0.52
Eccentricity4
0.33
SHOGoiN Cell Taxonomy
Homo sapiens
&
Mus musculus
cell
Differentiated (1)
Stem (0)
Embryo (0)
No.
Germ Layer
Differentiation State
Source Age
Anatomy Id
Cell Type Id
Anatomy:body Part
Anatomy:organ
Anatomy:sub-organ
Anatomy:tissue 1
Anatomy:tissue 2
Anatomy:tissue 3
Anatomy:tissue 4
Anatomy:tissue 5-1
Anatomy:tissue 5-2
Anatomy:tissue 5-3
Anatomy:tissue 5-4
Cell Type
Synonym
CL Id
UBERON Id
Image Id
Tissue Image ID
1
4
Mesodermal
4
Terminally differentiated
6
Fetus state
7
Postnatal state
8
Neonatal state
9
Infant state
10
Juvenile
11
Adult
3060205000102010000000
231
Trunk
Large intestine
Colon ascendens
Submucosa
Artery
Tunica intima
Subendothelial layer
Smooth muscle cell
CL:0000359
10
Image
SHOGoiN Cell Id
3060205000102010000000-231
Image Id
10
Tissue
Large intestine
Cell Type
Smooth muscle cell
Organism
Human
Cell Strain
Location
Large intestine
Karyotype
Race
Age
Sex
Medium
Serum
Other Chemical
Feeder
Other Treatment
Culture Period
Differentiaion
Self Renewal Ability
Onocogenic Transformation
Knock Out Gene
Knock In Gene
Disease
Cod
Shooting Date
2008.8.13
Shooting Condition
Embedding
Paraffin
Staining
Hematoxylin
Microscope
OLYMPUS DX51
Camera
OLYMPUS DP21
Image Size X
1600
Image Size Y
1200
Resolution
72
Magnification
400
Contact Person
Koji Yamanegi
Email
yamanegi@hyo-med.ac.jp
Telephone
0798-45-6432
Fax
0798-45-6431
Affiliation
Department of clinical pathology, Hyogo collage of medicine
Zip Code
663-8501
Address
1-1, Mukogawa, Nishinomiya, Hyogo
Country
Japan
Note
Nucleous Area
131
Nucleous Circularity
0.75
Nucleous Bending
155
Nucleous Convex Area
3462.35
Nucleous Ellipse Long Axis
18.41
Nucleous Inertia
0.52
Cell Area
698.5
Cell Circularity
0.37
Cell Bending
3.73
Cell Convex Area
1064
Cell Ellipse Long Axis
34.51
Cell Inertia
103481
Cell-nucleous Area Ratio
0.19
Cell-nucleous Eccentricity1
0.2
Cell-nucleous Eccentricity2
0.18
Cell-nucleous Eccentricity3
0.67
Cell-nucleous Eccentricity4
0.33
