Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1015971

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1015971


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3070000080000000000000-144Sequence Read ArchiveSRP016010SRP016010_M3Single-cell DNA methylation analysis of epimutations in mouse liver cells.MethylomeHepatocyteMouseLiverBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000035133 Arhgap5 Rho GTPase activating protein 5 7.4009 0.0000
2 ENSMUSG00000095477 Gm25076 predicted gene, 25076 7.3750 0.0000
3 ENSMUSG00000022951 Rcan1 regulator of calcineurin 1 6.9542 0.0000
4 ENSMUSG00000054662 Ano9 anoctamin 9 6.2288 0.0000
5 ENSMUSG00000066877 Nck2 non-catalytic region of tyrosine kinase adaptor protein 2 6.0661 0.0000
6 ENSMUSG00000028857 Tmem222 transmembrane protein 222 5.9773 0.0000
7 ENSMUSG00000083241 Gm13259 predicted gene 13259 5.9773 0.0000
8 ENSMUSG00000052426 Gm9877 predicted gene 9877 5.7549 0.0000
9 ENSMUSG00000032333 Stoml1 stomatin-like 1 5.6147 0.0000
10 ENSMUSG00000036986 Pml promyelocytic leukemia 5.6147 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000028822 Tmem50a transmembrane protein 50A -1.5850 0.1974
50599 ENSMUSG00000028524 Sgip1 SH3-domain GRB2-like (endophilin) interacting protein 1 -1.5850 0.1974
50598 ENSMUSG00000028270 Gbp2 guanylate binding protein 2 -1.5850 0.1974
50597 ENSMUSG00000027570 Col9a3 collagen, type IX, alpha 3 -1.5850 0.1974
50596 ENSMUSG00000027340 Slc23a2 solute carrier family 23 (nucleobase transporters), member 2 -1.5850 0.1974
50595 ENSMUSG00000027177 Hipk3 homeodomain interacting protein kinase 3 -1.5850 0.1974
50594 ENSMUSG00000027131 Emc4 ER membrane protein complex subunit 4 -1.5850 0.1974
50593 ENSMUSG00000026965 Anapc2 anaphase promoting complex subunit 2 -1.5850 0.1974
50592 ENSMUSG00000026398 Nr5a2 nuclear receptor subfamily 5, group A, member 2 -1.5850 0.1974
50591 ENSMUSG00000026349 Ccnt2 cyclin T2 -1.5850 0.1974

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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