Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1015972

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1015972


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3070000080000000000000-144Sequence Read ArchiveSRP016010SRP016010_M4Single-cell DNA methylation analysis of epimutations in mouse liver cells.MethylomeHepatocyteMouseLiverBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000064289 Tank TRAF family member-associated Nf-kappa B activator 6.3399 0.0000
2 ENSMUSG00000029028 Lrrc47 leucine rich repeat containing 47 5.4798 0.0000
3 ENSMUSG00000083241 Gm13259 predicted gene 13259 5.3923 0.0000
4 ENSMUSG00000069085 Dytn dystrotelin 5.0018 0.0000
5 ENSMUSG00000105151 Gm43241 predicted gene 43241 4.8074 0.0002
6 ENSMUSG00000037535 1700021A07Rik RIKEN cDNA 1700021A07 gene 4.6147 0.0000
7 ENSMUSG00000105055 Gm43079 predicted gene 43079 4.5236 0.0007
8 ENSMUSG00000086203 Gm13985 predicted gene 13985 4.3219 0.0019
9 ENSMUSG00000022905 Kpna1 karyopherin (importin) alpha 1 4.2089 0.0000
10 ENSMUSG00000086324 Gm15564 predicted gene 15564 4.2089 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000087961 Gm25393 predicted gene, 25393 -1.0000 0.2933
50599 ENSMUSG00000087804 Gm23434 predicted gene, 23434 -1.0000 0.2933
50598 ENSMUSG00000087791 Gm25969 predicted gene, 25969 -1.0000 0.2933
50597 ENSMUSG00000087721 Gm26280 predicted gene, 26280 -1.0000 0.0252
50596 ENSMUSG00000087652 Gm15918 predicted gene 15918 -1.0000 0.0074
50595 ENSMUSG00000087539 Gm13584 predicted gene 13584 -1.0000 0.0074
50594 ENSMUSG00000087508 Gm14174 predicted gene 14174 -1.0000 0.2933
50593 ENSMUSG00000087398 Gm12343 predicted gene 12343 -1.0000 0.2933
50592 ENSMUSG00000087377 AV099323 expressed sequence AV099323 -1.0000 0.2933
50591 ENSMUSG00000087255 Gm6985 predicted pseudogene 6985 -1.0000 0.0252

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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