Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147580

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147580


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7020001000000000000000-715Sequence Read ArchiveSRP023116SRP023116_M1Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000064763 Gm23515 predicted gene, 23515 9.0821 0.0000
2 ENSMUSG00000099069 Mir8090 microRNA 8090 9.0768 0.0000
3 ENSMUSG00000074595 Wfdc6a WAP four-disulfide core domain 6A 8.6770 0.0000
4 ENSMUSG00000077257 Gm26080 predicted gene, 26080 8.4686 0.0000
5 ENSMUSG00000080542 Gm22710 predicted gene, 22710 8.4686 0.0000
6 ENSMUSG00000107722 2900060B14Rik RIKEN cDNA 2900060B14 gene 8.4686 0.0000
7 ENSMUSG00000066359 Tcl1b1 T cell leukemia/lymphoma 1B, 1 8.2715 0.0000
8 ENSMUSG00000089627 Gm16228 predicted gene 16228 8.2510 0.0000
9 ENSMUSG00000072722 Gm6588 predicted gene 6588 8.1816 0.0000
10 ENSMUSG00000109602 Gm31597 predicted gene, 31597 8.1749 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000032788 Pdxk pyridoxal (pyridoxine, vitamin B6) kinase -6.4896 0.0000
50599 ENSMUSG00000096988 A930029G22Rik RIKEN cDNA A930029G22 gene -6.4894 0.0000
50598 ENSMUSG00000091636 Akain1 A kinase (PRKA) anchor inhibitor 1 -6.4894 0.0000
50597 ENSMUSG00000025037 Maoa monoamine oxidase A -6.4892 0.0000
50596 ENSMUSG00000021067 Sav1 salvador family WW domain containing 1 -6.4889 0.0000
50595 ENSMUSG00000022858 Tra2b transformer 2 beta -6.4882 0.0000
50594 ENSMUSG00000046351 Zfp322a zinc finger protein 322A -6.4872 0.0000
50593 ENSMUSG00000034040 Galnt17 polypeptide N-acetylgalactosaminyltransferase 17 -6.4865 0.0000
50592 ENSMUSG00000034940 Synrg synergin, gamma -6.4853 0.0000
50591 ENSMUSG00000056234 Ncoa4 nuclear receptor coactivator 4 -6.4847 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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