Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147581

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147581


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7020001000000000000000-715Sequence Read ArchiveSRP023116SRP023116_M2Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000066060 Gm12866 predicted gene 12866 7.9278 0.0000
2 ENSMUSG00000086405 9330198N18Rik RIKEN cDNA 9330198N18 gene 7.6906 0.0000
3 ENSMUSG00000028280 Gabrr1 gamma-aminobutyric acid (GABA) C receptor, subunit rho 1 7.4919 0.0000
4 ENSMUSG00000043501 Lgals2 lectin, galactose-binding, soluble 2 7.3092 0.0000
5 ENSMUSG00000104037 Gm37776 predicted gene, 37776 7.2637 0.0000
6 ENSMUSG00000100357 Gm28181 predicted gene 28181 7.1799 0.0000
7 ENSMUSG00000085001 Rapgef4os2 Rap guanine nucleotide exchange factor (GEF) 4, opposite strand 2 7.0553 0.0000
8 ENSMUSG00000038044 Cct8l1 chaperonin containing TCP1, subunit 8 (theta)-like 1 6.9542 0.0000
9 ENSMUSG00000088340 Gm22338 predicted gene, 22338 6.9307 0.0000
10 ENSMUSG00000072878 1700123L14Rik RIKEN cDNA 1700123L14 gene 6.9174 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000106649 Gm49349 predicted gene, 49349 -5.2566 0.0000
50599 ENSMUSG00000105847 Mir7650 microRNA 7650 -5.2566 0.0000
50598 ENSMUSG00000088929 Gm24299 predicted gene, 24299 -5.2566 0.0000
50597 ENSMUSG00000077614 Gm25500 predicted gene, 25500 -5.2566 0.0000
50596 ENSMUSG00000065282 Gm24455 predicted gene, 24455 -5.2566 0.0000
50595 ENSMUSG00000065226 Gm25791 predicted gene, 25791 -5.2566 0.0000
50594 ENSMUSG00000064797 Gm24357 predicted gene, 24357 -5.2566 0.0000
50593 ENSMUSG00000064634 Gm22620 predicted gene, 22620 -5.2566 0.0000
50592 ENSMUSG00000041138 Nme8 NME/NM23 family member 8 -5.2565 0.0000
50591 ENSMUSG00000031433 Rbm41 RNA binding motif protein 41 -5.2550 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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