Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147582

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147582


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7020001000000000000000-715Sequence Read ArchiveSRP023116SRP023116_M3Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000082286 Pisd-ps1 phosphatidylserine decarboxylase, pseudogene 1 8.4757 0.0000
2 ENSMUSG00000102862 Gm37640 predicted gene, 37640 8.3129 0.0000
3 ENSMUSG00000112886 Gm18339 predicted gene, 18339 7.9542 0.0000
5 ENSMUSG00000098842 Gm27907 predicted gene, 27907 7.6401 0.0000
6 ENSMUSG00000093665 Obox3-ps1 oocyte specific homeobox 3, pseudogene 1 7.4346 0.0000
7 ENSMUSG00000100789 Gm29508 predicted gene 29508 7.3428 0.0000
8 ENSMUSG00000023013 Aqp2 aquaporin 2 7.1997 0.0000
9 ENSMUSG00000077647 Gm24981 predicted gene, 24981 7.1997 0.0000
10 ENSMUSG00000067610 Klri1 killer cell lectin-like receptor family I member 1 7.1898 0.0000
50591 ENSMUSG00000068744 Psrc1 proline/serine-rich coiled-coil 1 -5.8803 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000060938 Rpl26 ribosomal protein L26 -5.8930 0.0000
50598 ENSMUSG00000080454 Gm24195 predicted gene, 24195 -5.8909 0.0000
50597 ENSMUSG00000020069 Hnrnph3 heterogeneous nuclear ribonucleoprotein H3 -5.8888 0.0000
50596 ENSMUSG00000107083 Gm43313 predicted gene 43313 -5.8887 0.0000
50595 ENSMUSG00000035910 Dcdc2a doublecortin domain containing 2a -5.8855 0.0000
50594 ENSMUSG00000055944 E130018O15Rik RIKEN cDNA E130018O15 gene -5.8826 0.0000
50593 ENSMUSG00000075304 Sp5 trans-acting transcription factor 5 -5.8817 0.0000
50592 ENSMUSG00000032640 Chsy1 chondroitin sulfate synthase 1 -5.8813 0.0000
50591 ENSMUSG00000068744 Psrc1 proline/serine-rich coiled-coil 1 -5.8803 0.0000
10 ENSMUSG00000067610 Klri1 killer cell lectin-like receptor family I member 1 7.1898 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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