Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147583

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147583


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7020001000000000000000-715Sequence Read ArchiveSRP023116SRP023116_M4Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000047502 Mroh7 maestro heat-like repeat family member 7 8.8281 0.0000
2 ENSMUSG00000098281 Gm27529 predicted gene, 27529 8.7966 0.0000
3 ENSMUSG00000086039 Gm12227 predicted gene 12227 8.4321 0.0000
4 ENSMUSG00000047861 Foxi1 forkhead box I1 8.4277 0.0000
5 ENSMUSG00000098842 Gm27907 predicted gene, 27907 8.0590 0.0000
6 ENSMUSG00000087950 Mir1948 microRNA 1948 7.9858 0.0000
7 ENSMUSG00000091003 Gm7244 predicted gene 7244 7.9581 0.0000
8 ENSMUSG00000077507 Gm24235 predicted gene, 24235 7.8826 0.0000
9 ENSMUSG00000081152 Gm12430 predicted gene 12430 7.8765 0.0000
10 ENSMUSG00000028280 Gabrr1 gamma-aminobutyric acid (GABA) C receptor, subunit rho 1 7.7748 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000032883 Acsl3 acyl-CoA synthetase long-chain family member 3 -6.4239 0.0000
50599 ENSMUSG00000103730 Gm38316 predicted gene, 38316 -6.4198 0.0000
50598 ENSMUSG00000024905 Tesmin testis expressed metallothionein like -6.4178 0.0000
50597 ENSMUSG00000059842 Zfp341 zinc finger protein 341 -6.4146 0.0000
50596 ENSMUSG00000038279 Nop2 NOP2 nucleolar protein -6.4136 0.0000
50595 ENSMUSG00000086533 Mypopos Myb-related transcription factor, partner of profilin, opposite strand -6.4132 0.0000
50594 ENSMUSG00000074355 Gm10676 predicted gene 10676 -6.4132 0.0000
50593 ENSMUSG00000021843 Ktn1 kinectin 1 -6.4128 0.0000
50592 ENSMUSG00000053121 Gm5129 predicted gene 5129 -6.4114 0.0000
50591 ENSMUSG00000029571 Tmem106b transmembrane protein 106B -6.4113 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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