Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147586

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147586


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7020001000000000000000-715Sequence Read ArchiveSRP023116SRP023116_M7Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000091411 Gm5916 predicted gene 5916 8.9300 0.0000
2 ENSMUSG00000086730 Platr12 pluripotency associated transcript 12 8.5597 0.0000
3 ENSMUSG00000023387 Kcnk16 potassium channel, subfamily K, member 16 8.2394 0.0000
4 ENSMUSG00000005628 Tmod4 tropomodulin 4 8.0955 0.0000
5 ENSMUSG00000092607 Scnm1 sodium channel modifier 1 8.0955 0.0000
6 ENSMUSG00000082806 Rpl13-ps1 ribosomal protein L13, pseudogene 1 8.0572 0.0000
7 ENSMUSG00000104610 Gm567 predicted gene 567 8.0509 0.0000
8 ENSMUSG00000029165 Agbl5 ATP/GTP binding protein-like 5 7.9566 0.0000
9 ENSMUSG00000107201 5930420M18Rik RIKEN cDNA 5930420M18 gene 7.9566 0.0000
10 ENSMUSG00000079484 Phyhd1 phytanoyl-CoA dioxygenase domain containing 1 7.9464 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000024529 Lox lysyl oxidase -6.5102 0.0000
50599 ENSMUSG00000027490 E2f1 E2F transcription factor 1 -6.5082 0.0000
50598 ENSMUSG00000033014 Trim33 tripartite motif-containing 33 -6.5078 0.0000
50597 ENSMUSG00000026628 Atf3 activating transcription factor 3 -6.5040 0.0000
50596 ENSMUSG00000079036 Alkbh1 alkB homolog 1, histone H2A dioxygenase -6.4981 0.0000
50595 ENSMUSG00000021040 Slirp SRA stem-loop interacting RNA binding protein -6.4981 0.0000
50594 ENSMUSG00000065362 Gm24411 predicted gene, 24411 -6.4963 0.0000
50593 ENSMUSG00000000056 Narf nuclear prelamin A recognition factor -6.4934 0.0000
50592 ENSMUSG00000037499 Nenf neuron derived neurotrophic factor -6.4931 0.0000
50591 ENSMUSG00000003824 Syce2 synaptonemal complex central element protein 2 -6.4927 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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