Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147587

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147587


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7020001000000000000000-715Sequence Read ArchiveSRP023116SRP023116_M8Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000048188 Gm8181 predicted gene 8181 7.7944 0.0000
2 ENSMUSG00000035246 Pcyt1b phosphate cytidylyltransferase 1, choline, beta isoform 7.6933 0.0000
3 ENSMUSG00000067610 Klri1 killer cell lectin-like receptor family I member 1 7.5078 0.0000
4 ENSMUSG00000020706 Ftsj3 FtsJ RNA methyltransferase homolog 3 (E. coli) 7.4527 0.0000
5 ENSMUSG00000030720 Cln3 ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease) 7.2527 0.0000
6 ENSMUSG00000098540 Mir7059 microRNA 7059 7.2527 0.0000
7 ENSMUSG00000078280 Tas2r122 taste receptor, type 2, member 122 7.1699 0.0000
8 ENSMUSG00000079626 Rhox7b reproductive homeobox 7B 7.1466 0.0000
9 ENSMUSG00000085839 Gm15949 predicted gene 15949 7.0589 0.0000
10 ENSMUSG00000070461 9230112E08Rik RIKEN cDNA 9230112E08 gene 7.0423 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000074517 Gm10710 predicted gene 10710 -5.7100 0.0000
50599 ENSMUSG00000040883 Tmem205 transmembrane protein 205 -5.7091 0.0000
50598 ENSMUSG00000006241 Ccdc159 coiled-coil domain containing 159 -5.7091 0.0000
50597 ENSMUSG00000041629 Fam104a family with sequence similarity 104, member A -5.7084 0.0000
50596 ENSMUSG00000041623 D11Wsu47e DNA segment, Chr 11, Wayne State University 47, expressed -5.7084 0.0000
50595 ENSMUSG00000062127 Cttnbp2nl CTTNBP2 N-terminal like -5.7078 0.0000
50594 ENSMUSG00000023169 Slc38a1 solute carrier family 38, member 1 -5.7073 0.0000
50593 ENSMUSG00000021276 Cinp cyclin-dependent kinase 2 interacting protein -5.7052 0.0000
50592 ENSMUSG00000021275 Tecpr2 tectonin beta-propeller repeat containing 2 -5.7052 0.0000
50591 ENSMUSG00000085122 4933404K08Rik RIKEN cDNA 4933404K08 gene -5.7041 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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