Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147593

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147593


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5030203000000000000000-761Sequence Read ArchiveSRP023116SRP023116_M10Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeMetaphase II oocyteMouseGenitaliaBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000055670 Zzef1 zinc finger, ZZ-type with EF hand domain 1 7.9744 0.0000
2 ENSMUSG00000022031 Elp3 elongator acetyltransferase complex subunit 3 7.9687 0.0000
3 ENSMUSG00000057454 Lypd3 Ly6/Plaur domain containing 3 7.9009 0.0000
4 ENSMUSG00000102862 Gm37640 predicted gene, 37640 7.9009 0.0000
5 ENSMUSG00000061065 H2al1o H2A histone family member L1O 7.8642 0.0000
6 ENSMUSG00000098212 Gm38706 predicted gene, 38706 7.7611 0.0000
7 ENSMUSG00000085376 Gm14508 predicted gene 14508 7.7376 0.0000
8 ENSMUSG00000038751 Ptk6 PTK6 protein tyrosine kinase 6 7.7108 0.0000
9 ENSMUSG00000028671 Gale galactose-4-epimerase, UDP 7.7107 0.0000
10 ENSMUSG00000065523 Mir192 microRNA 192 7.6962 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000033768 Nrxn2 neurexin II -6.3700 0.0000
50599 ENSMUSG00000041632 Mrps27 mitochondrial ribosomal protein S27 -6.3669 0.0000
50598 ENSMUSG00000021650 Ptcd2 pentatricopeptide repeat domain 2 -6.3669 0.0000
50597 ENSMUSG00000028089 Chd1l chromodomain helicase DNA binding protein 1-like -6.3666 0.0000
50596 ENSMUSG00000083668 Gm5648 predicted pseudogene 5648 -6.3631 0.0000
50595 ENSMUSG00000039879 Heca hdc homolog, cell cycle regulator -6.3612 0.0000
50594 ENSMUSG00000028233 Tgs1 trimethylguanosine synthase 1 -6.3604 0.0000
50593 ENSMUSG00000046618 Olfml2a olfactomedin-like 2A -6.3576 0.0007
50592 ENSMUSG00000054792 Klhl18 kelch-like 18 -6.3556 0.0000
50591 ENSMUSG00000016534 Lamp2 lysosomal-associated membrane protein 2 -6.3529 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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