Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147594

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147594


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7010000000000000000000-769Sequence Read ArchiveSRP023116SRP023116_M11Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeFirst polar body (Zygote)MouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000024953 Prdx5 peroxiredoxin 5 7.7814 0.0000
2 ENSMUSG00000038812 Trmt112 tRNA methyltransferase 11-2 7.7814 0.0000
3 ENSMUSG00000063511 Snrnp70 small nuclear ribonucleoprotein 70 (U1) 7.5216 0.0000
4 ENSMUSG00000101398 Gm2617 predicted gene 2617 7.5058 0.0000
5 ENSMUSG00000030785 Cox6a2 cytochrome c oxidase subunit 6A2 7.4998 0.0000
6 ENSMUSG00000045374 Wdr81 WD repeat domain 81 7.4660 0.0000
7 ENSMUSG00000089627 Gm16228 predicted gene 16228 7.2574 0.0000
8 ENSMUSG00000026219 Trip12 thyroid hormone receptor interactor 12 7.1997 0.0000
9 ENSMUSG00000038564 Ift172 intraflagellar transport 172 7.0875 0.0000
10 ENSMUSG00000029470 P2rx4 purinergic receptor P2X, ligand-gated ion channel 4 7.0839 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000022889 Mrpl39 mitochondrial ribosomal protein L39 -6.0771 0.0000
50599 ENSMUSG00000024908 Ppp6r3 protein phosphatase 6, regulatory subunit 3 -6.0771 0.0000
50598 ENSMUSG00000078652 Psme3 proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki) -6.0735 0.0000
50597 ENSMUSG00000078651 Aoc2 amine oxidase, copper containing 2 (retina-specific) -6.0735 0.0000
50596 ENSMUSG00000007564 Ppp2r1a protein phosphatase 2, regulatory subunit A, alpha -6.0731 0.0000
50595 ENSMUSG00000030609 Aen apoptosis enhancing nuclease -6.0731 0.0000
50594 ENSMUSG00000026048 Ercc5 excision repair cross-complementing rodent repair deficiency, complementation group 5 -6.0711 0.0000
50593 ENSMUSG00000021595 Nsun2 NOL1/NOP2/Sun domain family member 2 -6.0700 0.0000
50592 ENSMUSG00000070462 Tlnrd1 talin rod domain containing 1 -6.0696 0.0000
50591 ENSMUSG00000086426 Gm15295 predicted gene 15295 -6.0674 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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