Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147595

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147595


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7010000000000000000000-769Sequence Read ArchiveSRP023116SRP023116_M12Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeFirst polar body (Zygote)MouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000090095 Rpl29-ps1 ribosomal protein L29, pseudogene 1 8.5699 0.0000
3 ENSMUSG00000091306 Gm17606 predicted gene, 17606 8.5229 0.0000
4 ENSMUSG00000028280 Gabrr1 gamma-aminobutyric acid (GABA) C receptor, subunit rho 1 8.4676 0.0000
5 ENSMUSG00000073255 Gm14632 predicted gene 14632 8.2992 0.0000
6 ENSMUSG00000053898 Ech1 enoyl coenzyme A hydratase 1, peroxisomal 8.2605 0.0000
7 ENSMUSG00000055818 A230083G16Rik RIKEN cDNA A230083G16 gene 8.1983 0.0000
8 ENSMUSG00000036835 Psenen presenilin enhancer gamma secretase subunit 8.1342 0.0000
9 ENSMUSG00000036845 Lin37 lin-37 homolog (C. elegans) 8.1342 0.0000
10 ENSMUSG00000078765 U2af1l4 U2 small nuclear RNA auxiliary factor 1-like 4 8.1342 0.0000
50591 ENSMUSG00000084918 Gm12708 predicted gene 12708 -6.5569 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000025607 Copg2 coatomer protein complex, subunit gamma 2 -6.5685 0.0000
50599 ENSMUSG00000025475 Adgra1 adhesion G protein-coupled receptor A1 -6.5655 0.0000
50598 ENSMUSG00000090626 Tex9 testis expressed gene 9 -6.5654 0.0000
50597 ENSMUSG00000058729 Lin9 lin-9 homolog (C. elegans) -6.5652 0.0000
50596 ENSMUSG00000028580 Pum1 pumilio RNA-binding family member 1 -6.5642 0.0000
50595 ENSMUSG00000086582 Gm16272 predicted gene 16272 -6.5639 0.0000
50594 ENSMUSG00000002416 Ndufb2 NADH:ubiquinone oxidoreductase subunit B2 -6.5639 0.0000
50593 ENSMUSG00000033964 Zbtb41 zinc finger and BTB domain containing 41 -6.5637 0.0000
50592 ENSMUSG00000021337 Scgn secretagogin, EF-hand calcium binding protein -6.5617 0.0000
50591 ENSMUSG00000084918 Gm12708 predicted gene 12708 -6.5569 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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