Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147596

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147596


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5090101000001000000000-236Sequence Read ArchiveSRP023116SRP023116_M13Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeSpermMouseGenitaliaBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000011118 Panx3 pannexin 3 8.2877 0.0000
2 ENSMUSG00000082312 Gm11996 predicted gene 11996 8.0980 0.0000
3 ENSMUSG00000028069 Gpatch4 G patch domain containing 4 8.0112 0.0000
4 ENSMUSG00000107931 Gm44475 predicted gene, 44475 7.9188 0.0000
6 ENSMUSG00000071151 Gm4799 predicted gene 4799 7.8455 0.0000
7 ENSMUSG00000070972 Dnajc25 DnaJ heat shock protein family (Hsp40) member C25 7.7682 0.0000
8 ENSMUSG00000092345 Gm20503 predicted gene 20503 7.7682 0.0000
9 ENSMUSG00000038044 Cct8l1 chaperonin containing TCP1, subunit 8 (theta)-like 1 7.7616 0.0000
10 ENSMUSG00000037400 Atp11b ATPase, class VI, type 11B 7.7415 0.0000
50591 ENSMUSG00000097781 9330136K24Rik RIKEN cDNA 9330136K24 gene -6.3517 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000084781 D930015M05Rik RIKEN cDNA D930015M05 gene -6.3692 0.0000
50599 ENSMUSG00000034800 Zfp661 zinc finger protein 661 -6.3688 0.0000
50598 ENSMUSG00000031666 Rbl2 RB transcriptional corepressor like 2 -6.3661 0.0000
50597 ENSMUSG00000025226 Fbxl15 F-box and leucine-rich repeat protein 15 -6.3646 0.0000
50596 ENSMUSG00000021054 Sgpp1 sphingosine-1-phosphate phosphatase 1 -6.3583 0.0000
50595 ENSMUSG00000102703 Gm38313 predicted gene, 38313 -6.3581 0.0000
50594 ENSMUSG00000033658 Ddx19b DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b -6.3556 0.0000
50593 ENSMUSG00000031960 Aars alanyl-tRNA synthetase -6.3556 0.0000
50592 ENSMUSG00000024095 Hnrnpll heterogeneous nuclear ribonucleoprotein L-like -6.3529 0.0000
50591 ENSMUSG00000097781 9330136K24Rik RIKEN cDNA 9330136K24 gene -6.3517 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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