Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147599

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147599


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5090101000001000000000-236Sequence Read ArchiveSRP023116SRP023116_M16Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeSpermMouseGenitaliaBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000090095 Rpl29-ps1 ribosomal protein L29, pseudogene 1 9.7797 0.0000
2 ENSMUSG00000029179 Zcchc4 zinc finger, CCHC domain containing 4 9.1284 0.0000
3 ENSMUSG00000067750 Khdc1a KH domain containing 1A 8.9773 0.0000
4 ENSMUSG00000086194 Gm16329 predicted gene 16329 8.9773 0.0000
5 ENSMUSG00000110372 Gm8096 predicted gene 8096 8.8880 0.0000
6 ENSMUSG00000109657 1700008N11Rik RIKEN cDNA 1700008N11 gene 8.8424 0.0000
7 ENSMUSG00000078439 Smim24 small integral membrane protein 24 8.6245 0.0000
8 ENSMUSG00000078440 Dohh deoxyhypusine hydroxylase/monooxygenase 8.6245 0.0000
9 ENSMUSG00000098811 Mir6913 microRNA 6913 8.6245 0.0000
10 ENSMUSG00000074570 Cass4 Cas scaffolding protein family member 4 8.5812 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000072387 Gm10356 predicted gene 10356 -7.8284 0.0000
50599 ENSMUSG00000020580 Rock2 Rho-associated coiled-coil containing protein kinase 2 -7.8273 0.0000
50598 ENSMUSG00000097232 Gm26854 predicted gene, 26854 -7.8266 0.0000
50597 ENSMUSG00000066568 Lsm14a LSM14A mRNA processing body assembly factor -7.8259 0.0000
50595 ENSMUSG00000021095 Gsc goosecoid homeobox -7.8192 0.0000
50594 ENSMUSG00000102158 Gm34342 predicted gene, 34342 -7.8183 0.0000
50593 ENSMUSG00000019256 Ahr aryl-hydrocarbon receptor -7.8148 0.0000
50591 ENSMUSG00000027173 Depdc7 DEP domain containing 7 -7.8088 0.0000
10 ENSMUSG00000074570 Cass4 Cas scaffolding protein family member 4 8.5812 0.0000
9 ENSMUSG00000098811 Mir6913 microRNA 6913 8.6245 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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