Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147601

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147601


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7010000000000000000000-769Sequence Read ArchiveSRP023116SRP023116_M18Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeMale pronucleus (Zygote)MouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000110525 Gm45893 predicted gene 45893 7.9715 0.0000
2 ENSMUSG00000064763 Gm23515 predicted gene, 23515 7.4346 0.0000
3 ENSMUSG00000017737 Mmp9 matrix metallopeptidase 9 7.0187 0.0000
4 ENSMUSG00000088924 Gm24298 predicted gene, 24298 6.9658 0.0000
5 ENSMUSG00000025515 Muc2 mucin 2 6.9307 0.0000
6 ENSMUSG00000006529 Itih1 inter-alpha trypsin inhibitor, heavy chain 1 6.9189 0.0000
7 ENSMUSG00000021918 Nek4 NIMA (never in mitosis gene a)-related expressed kinase 4 6.9189 0.0000
8 ENSMUSG00000099193 Gm27374 predicted gene, 27374 6.9189 0.0000
9 ENSMUSG00000110117 Gm17990 predicted gene, 17990 6.7096 0.0000
10 ENSMUSG00000100827 Gm29069 predicted gene 29069 6.7004 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000029267 Mtf2 metal response element binding transcription factor 2 -5.6878 0.0000
50599 ENSMUSG00000090724 4930542C12Rik RIKEN cDNA 4930542C12 gene -5.6876 0.0000
50598 ENSMUSG00000019235 Rps6kl1 ribosomal protein S6 kinase-like 1 -5.6858 0.0000
50597 ENSMUSG00000042502 Cd2bp2 CD2 cytoplasmic tail binding protein 2 -5.6847 0.0000
50596 ENSMUSG00000099003 Mir7035 microRNA 7035 -5.6830 0.0000
50595 ENSMUSG00000086656 Gm15701 predicted gene 15701 -5.6830 0.0000
50594 ENSMUSG00000004952 Rasa4 RAS p21 protein activator 4 -5.6830 0.0000
50593 ENSMUSG00000097626 4921504A21Rik RIKEN cDNA 4921504A21 gene -5.6816 0.0001
50592 ENSMUSG00000029407 Uso1 USO1 vesicle docking factor -5.6813 0.0000
50591 ENSMUSG00000028790 Khdrbs1 KH domain containing, RNA binding, signal transduction associated 1 -5.6810 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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