Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147602

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147602


Profile download
7010000000000000000000-769Sequence Read ArchiveSRP023116SRP023116_M19Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeFemale pronucleus (Zygote)MouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000098281 Gm27529 predicted gene, 27529 10.3725 0.0000
2 ENSMUSG00000098276 Mir6358 microRNA 6358 9.2372 0.0000
3 ENSMUSG00000098284 A330093E20Rik RIKEN cDNA A330093E20 gene 9.1997 0.0000
4 ENSMUSG00000047369 Dnah14 dynein, axonemal, heavy chain 14 9.0112 0.0000
5 ENSMUSG00000090658 Prss47 protease, serine 47 8.9099 0.0000
6 ENSMUSG00000066771 Gm5614 predicted gene 5614 8.9089 0.0000
7 ENSMUSG00000076128 Mir686 microRNA 686 8.7842 0.0000
8 ENSMUSG00000109218 Gm44872 predicted gene 44872 8.7020 0.0000
9 ENSMUSG00000049728 Zfp668 zinc finger protein 668 8.6841 0.0000
10 ENSMUSG00000049739 Zfp646 zinc finger protein 646 8.6841 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000071033 Gm10308 predicted gene 10308 -7.3550 0.0000
50599 ENSMUSG00000031910 Has3 hyaluronan synthase 3 -7.3487 0.0000
50598 ENSMUSG00000059994 Fcrl1 Fc receptor-like 1 -7.3487 0.0000
50597 ENSMUSG00000039536 Stau1 staufen double-stranded RNA binding protein 1 -7.3487 0.0000
50596 ENSMUSG00000026603 Smyd2 SET and MYND domain containing 2 -7.3479 0.0000
50595 ENSMUSG00000098538 Gm27866 predicted gene, 27866 -7.3461 0.0000
50594 ENSMUSG00000105841 Mir3960 microRNA 3960 -7.3458 0.0000
50593 ENSMUSG00000027763 Mbnl1 muscleblind like splicing factor 1 -7.3444 0.0000
50591 ENSMUSG00000093662 Gm20649 predicted gene 20649 -7.3407 0.0000
10 ENSMUSG00000049739 Zfp646 zinc finger protein 646 8.6841 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...