Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147603

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147603


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7010000000000000000000-769Sequence Read ArchiveSRP023116SRP023116_M20Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeMale pronucleus (Zygote)MouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000104610 Gm567 predicted gene 567 5.4460 0.0000
2 ENSMUSG00000025461 Cd163l1 CD163 molecule-like 1 5.1699 0.0000
3 ENSMUSG00000045318 Adra2c adrenergic receptor, alpha 2c 5.1699 0.0000
4 ENSMUSG00000028093 Acp6 acid phosphatase 6, lysophosphatidic 5.1153 0.0000
5 ENSMUSG00000091336 Gm17157 predicted gene 17157 5.0530 0.0000
6 ENSMUSG00000001120 Pcbp3 poly(rC) binding protein 3 5.0444 0.0000
7 ENSMUSG00000103930 Gm36961 predicted gene, 36961 5.0444 0.0000
8 ENSMUSG00000036040 Adamtsl2 ADAMTS-like 2 5.0000 0.0000
9 ENSMUSG00000098881 Mir6927 microRNA 6927 5.0000 0.0000
10 ENSMUSG00000033294 Noc4l NOC4 like 4.9542 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000034761 Map4k5 mitogen-activated protein kinase kinase kinase kinase 5 -4.6237 0.0000
50599 ENSMUSG00000021066 Atl1 atlastin GTPase 1 -4.6237 0.0000
50598 ENSMUSG00000027540 Ptpn1 protein tyrosine phosphatase, non-receptor type 1 -4.6236 0.0000
50597 ENSMUSG00000071454 Dtnb dystrobrevin, beta -4.6235 0.0000
50596 ENSMUSG00000018733 Pex12 peroxisomal biogenesis factor 12 -4.6221 0.0000
50595 ENSMUSG00000098831 Mir7119 microRNA 7119 -4.6198 0.0003
50594 ENSMUSG00000042489 Clspn claspin -4.6198 0.0003
50593 ENSMUSG00000026202 Tuba4a tubulin, alpha 4A -4.6197 0.0000
50592 ENSMUSG00000086881 Gm13594 predicted gene 13594 -4.6174 0.0000
50591 ENSMUSG00000032643 Fhl3 four and a half LIM domains 3 -4.6131 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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