Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147604

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147604


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7010000000000000000000-769Sequence Read ArchiveSRP023116SRP023116_M21Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeFemale pronucleus (Zygote)MouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
2 ENSMUSG00000110111 Gm7786 predicted gene 7786 6.7279 0.0000
3 ENSMUSG00000023274 Cd4 CD4 antigen 6.6380 0.0000
4 ENSMUSG00000110170 St6galnac2 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 6.2479 0.0000
5 ENSMUSG00000084191 Gm15167 predicted gene 15167 6.1699 0.0000
6 ENSMUSG00000093409 Gm25193 predicted gene, 25193 6.1293 0.0000
8 ENSMUSG00000102928 Ighv1-46 immunoglobulin heavy variable V1-46 6.0661 0.0000
9 ENSMUSG00000037627 Rgs22 regulator of G-protein signalling 22 6.0444 0.0000
10 ENSMUSG00000054446 Cpa1 carboxypeptidase A1, pancreatic 6.0444 0.0000
50591 ENSMUSG00000000581 C1d C1D nuclear receptor co-repressor -5.1699 0.0000
50592 ENSMUSG00000013928 Thap8 THAP domain containing 8 -5.1699 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000103366 C630004L07Rik RIKEN cDNA C630004L07 gene -5.1699 0.0001
50599 ENSMUSG00000096656 Trav12-2 T cell receptor alpha variable 12-2 -5.1699 0.0001
50598 ENSMUSG00000088548 Gm24960 predicted gene, 24960 -5.1699 0.0000
50597 ENSMUSG00000084143 Gm13400 predicted gene 13400 -5.1699 0.0000
50596 ENSMUSG00000036932 Aifm1 apoptosis-inducing factor, mitochondrion-associated 1 -5.1699 0.0000
50595 ENSMUSG00000031104 Rab33a RAB33A, member RAS oncogene family -5.1699 0.0000
50594 ENSMUSG00000028919 Arhgef19 Rho guanine nucleotide exchange factor (GEF) 19 -5.1699 0.0001
50593 ENSMUSG00000028563 Tm2d1 TM2 domain containing 1 -5.1699 0.0000
50592 ENSMUSG00000013928 Thap8 THAP domain containing 8 -5.1699 0.0000
50591 ENSMUSG00000000581 C1d C1D nuclear receptor co-repressor -5.1699 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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