Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147606

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147606


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7010000000000000000000-769Sequence Read ArchiveSRP023116SRP023116_M23Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeFemale pronucleus (Zygote)MouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000022683 Pla2g10 phospholipase A2, group X 7.4512 0.0000
2 ENSMUSG00000086550 Pla2g10os phospholipase A2, group X, opposite strand 7.4512 0.0000
3 ENSMUSG00000088236 Gm25425 predicted gene, 25425 7.2288 0.0000
4 ENSMUSG00000024220 Zfp523 zinc finger protein 523 7.2185 0.0000
5 ENSMUSG00000044312 Neurog3 neurogenin 3 7.2082 0.0000
6 ENSMUSG00000082341 Gm14143 predicted gene 14143 7.1799 0.0000
7 ENSMUSG00000029608 Rph3a rabphilin 3A 6.9396 0.0000
8 ENSMUSG00000025221 Kcnip2 Kv channel-interacting protein 2 6.9069 0.0000
9 ENSMUSG00000057945 Gm17136 predicted gene 17136 6.8455 0.0000
10 ENSMUSG00000110701 Gm6013 predicted gene 6013 6.8150 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000060586 H2-Eb1 histocompatibility 2, class II antigen E beta -5.5949 0.0000
50599 ENSMUSG00000082530 Gm12168 predicted gene 12168 -5.5946 0.0000
50598 ENSMUSG00000020399 Havcr2 hepatitis A virus cellular receptor 2 -5.5946 0.0000
50597 ENSMUSG00000088121 Gm25721 predicted gene, 25721 -5.5942 0.0000
50596 ENSMUSG00000029320 1700016H13Rik RIKEN cDNA 1700016H13 gene -5.5942 0.0000
50595 ENSMUSG00000028149 Rap1gds1 RAP1, GTP-GDP dissociation stimulator 1 -5.5897 0.0000
50594 ENSMUSG00000106169 Mir6948 microRNA 6948 -5.5889 0.0000
50593 ENSMUSG00000058665 En1 engrailed 1 -5.5864 0.0432
50592 ENSMUSG00000098314 Gm27952 predicted gene, 27952 -5.5850 0.0310
50591 ENSMUSG00000086050 Gm16045 predicted gene 16045 -5.5850 0.0005

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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