Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147607

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147607


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7010000000000000000000-769Sequence Read ArchiveSRP023116SRP023116_M24Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeMale pronucleus (Zygote)MouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000092751 Mir3080 microRNA 3080 8.7640 0.0000
2 ENSMUSG00000104967 Gm43436 predicted gene 43436 8.2036 0.0000
3 ENSMUSG00000045267 Tas2r119 taste receptor, type 2, member 119 8.0768 0.0000
4 ENSMUSG00000094202 Mup-ps26 major urinary protein, pseudogene 26 8.0112 0.0000
5 ENSMUSG00000091336 Gm17157 predicted gene 17157 7.8138 0.0000
6 ENSMUSG00000022831 Hcls1 hematopoietic cell specific Lyn substrate 1 7.7437 0.0000
7 ENSMUSG00000024777 Ppp2r5b protein phosphatase 2, regulatory subunit B', beta 7.7415 0.0000
8 ENSMUSG00000038608 Dock10 dedicator of cytokinesis 10 7.7142 0.0000
9 ENSMUSG00000103192 Gm37645 predicted gene, 37645 7.7142 0.0000
10 ENSMUSG00000089916 Gm16160 predicted gene 16160 7.7074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000048834 Vstm2a V-set and transmembrane domain containing 2A -6.7402 0.0000
50599 ENSMUSG00000082001 Gm15607 predicted gene 15607 -6.7391 0.0000
50598 ENSMUSG00000110910 4921534A09Rik RIKEN cDNA 4921534A09 gene -6.7385 0.0000
50597 ENSMUSG00000080575 Mir1190 microRNA 1190 -6.7373 0.0000
50596 ENSMUSG00000069706 Taar5 trace amine-associated receptor 5 -6.7357 0.0000
50595 ENSMUSG00000020986 Sec23a SEC23 homolog A, COPII coat complex component -6.7307 0.0212
50594 ENSMUSG00000041423 Paqr6 progestin and adipoQ receptor family member VI -6.7280 0.0000
50593 ENSMUSG00000042997 Nhlrc3 NHL repeat containing 3 -6.7279 0.0000
50592 ENSMUSG00000038648 Creb3l2 cAMP responsive element binding protein 3-like 2 -6.7273 0.0000
50591 ENSMUSG00000035757 Selenoo selenoprotein O -6.7252 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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