Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147609

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147609


Profile download
7010000000000000000000-769Sequence Read ArchiveSRP023116SRP023116_M26Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeMale pronucleus (Zygote)MouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000084048 Gm12042 predicted gene 12042 5.5655 0.0000
2 ENSMUSG00000112677 Gm48868 predicted gene, 48868 5.5546 0.0000
3 ENSMUSG00000085936 2610307P16Rik RIKEN cDNA 2610307P16 gene 5.4290 0.0000
4 ENSMUSG00000103095 Gm37557 predicted gene, 37557 5.3576 0.0000
5 ENSMUSG00000082871 Gm13263 predicted gene 13263 5.2854 0.0000
6 ENSMUSG00000062190 Lancl2 LanC (bacterial lantibiotic synthetase component C)-like 2 5.2095 0.0000
7 ENSMUSG00000057037 Cfhr1 complement factor H-related 1 5.0986 0.0000
8 ENSMUSG00000087345 Gm13746 predicted gene 13746 5.0875 0.0000
9 ENSMUSG00000020100 Slc29a3 solute carrier family 29 (nucleoside transporters), member 3 5.0444 0.0000
10 ENSMUSG00000031651 Triml1 tripartite motif family-like 1 5.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000079988 Gm11970 predicted gene 11970 -4.7073 0.0000
50599 ENSMUSG00000035133 Arhgap5 Rho GTPase activating protein 5 -4.7045 0.0000
50598 ENSMUSG00000082920 Gm13864 predicted gene 13864 -4.7038 0.0000
50597 ENSMUSG00000038836 Agbl3 ATP/GTP binding protein-like 3 -4.7038 0.0000
50596 ENSMUSG00000034449 Dhrs11 dehydrogenase/reductase (SDR family) member 11 -4.7027 0.0000
50595 ENSMUSG00000054160 Nkx2-4 NK2 homeobox 4 -4.7025 0.0000
50594 ENSMUSG00000105216 Traj47 T cell receptor alpha joining 47 -4.7004 0.0362
50592 ENSMUSG00000096971 4930556M19Rik RIKEN cDNA 4930556M19 gene -4.7004 0.0014
50591 ENSMUSG00000076883 Traj48 T cell receptor alpha joining 48 -4.7004 0.0362
10 ENSMUSG00000031651 Triml1 tripartite motif family-like 1 5.0000 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...