Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147610

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147610


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7010000000000000000000-769Sequence Read ArchiveSRP023116SRP023116_M27Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeFemale pronucleus (Zygote)MouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000004018 Fancl Fanconi anemia, complementation group L 6.4594 0.0000
2 ENSMUSG00000041346 Wrap53 WD repeat containing, antisense to Trp53 6.4594 0.0000
3 ENSMUSG00000050147 F2rl3 coagulation factor II (thrombin) receptor-like 3 6.4594 0.0000
4 ENSMUSG00000092176 Gm20460 predicted gene 20460 6.2668 0.0000
5 ENSMUSG00000077844 Gm22231 predicted gene, 22231 6.1598 0.0000
6 ENSMUSG00000105496 Mir7004 microRNA 7004 6.0966 0.0000
7 ENSMUSG00000024424 Ttc39c tetratricopeptide repeat domain 39C 6.0472 0.0000
8 ENSMUSG00000099162 Gm27168 predicted gene 27168 6.0444 0.0000
9 ENSMUSG00000021957 Tkt transketolase 6.0000 0.0000
10 ENSMUSG00000093156 Mir3076 microRNA 3076 6.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000023262 Acy1 aminoacylase 1 -5.1293 0.0093
50599 ENSMUSG00000004568 Arhgef18 rho/rac guanine nucleotide exchange factor (GEF) 18 -5.1293 0.0093
50598 ENSMUSG00000029616 Erp29 endoplasmic reticulum protein 29 -5.1262 0.0000
50597 ENSMUSG00000029452 Tmem116 transmembrane protein 116 -5.1262 0.0000
50596 ENSMUSG00000046718 Bst2 bone marrow stromal cell antigen 2 -5.1255 0.0000
50595 ENSMUSG00000039783 Kmo kynurenine 3-monooxygenase (kynurenine 3-hydroxylase) -5.1255 0.0000
50594 ENSMUSG00000026526 Fh1 fumarate hydratase 1 -5.1255 0.0000
50593 ENSMUSG00000112314 Gm49454 predicted gene, 49454 -5.1254 0.0006
50592 ENSMUSG00000043664 Tmem221 transmembrane protein 221 -5.1250 0.0000
50591 ENSMUSG00000020124 Usp15 ubiquitin specific peptidase 15 -5.1238 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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