Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1200272

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1200272


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5090101000001000000000-236Sequence Read ArchiveSRP023116SRP023116_M28Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeSpermMouseGenitaliaBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000081208 Gm11400 predicted gene 11400 7.8658 0.0000
2 ENSMUSG00000078130 Gm11555 predicted gene 11555 7.7211 0.0000
3 ENSMUSG00000004612 Nkg7 natural killer cell group 7 sequence 7.6265 0.0000
4 ENSMUSG00000038973 Cldnd2 claudin domain containing 2 7.6265 0.0000
5 ENSMUSG00000046034 Otulin OTU deubiquitinase with linear linkage specificity 7.5925 0.0000
6 ENSMUSG00000066368 Actl11 actin-like 11 7.5924 0.0000
7 ENSMUSG00000053769 Lysmd1 LysM, putative peptidoglycan-binding, domain containing 1 7.4388 0.0000
8 ENSMUSG00000092607 Scnm1 sodium channel modifier 1 7.4388 0.0000
9 ENSMUSG00000098498 Mir8099-1 microRNA 8099-1 7.4388 0.0000
10 ENSMUSG00000105291 Gm18901 predicted gene, 18901 7.2384 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000003131 Pafah1b2 platelet-activating factor acetylhydrolase, isoform 1b, subunit 2 -5.6845 0.0000
50599 ENSMUSG00000019590 Cyb561 cytochrome b-561 -5.6814 0.0000
50598 ENSMUSG00000024036 Slc37a1 solute carrier family 37 (glycerol-3-phosphate transporter), member 1 -5.6812 0.0000
50597 ENSMUSG00000043811 Rtn4r reticulon 4 receptor -5.6790 0.0096
50596 ENSMUSG00000100502 Gm28286 predicted gene 28286 -5.6724 0.0000
50595 ENSMUSG00000053453 Thoc7 THO complex 7 -5.6667 0.0000
50594 ENSMUSG00000015247 Nipsnap3b nipsnap homolog 3B -5.6659 0.0000
50593 ENSMUSG00000026556 Vangl2 VANGL planar cell polarity 2 -5.6643 0.0000
50592 ENSMUSG00000106840 Gm42790 predicted gene 42790 -5.6629 0.0000
50591 ENSMUSG00000025537 Phkg1 phosphorylase kinase gamma 1 -5.6629 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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