Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1200273

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1200273


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5090101000001000000000-236Sequence Read ArchiveSRP023116SRP023116_M29Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeSpermMouseGenitaliaBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000030996 Art1 ADP-ribosyltransferase 1 5.9386 0.0000
2 ENSMUSG00000070424 Art5 ADP-ribosyltransferase 5 5.9386 0.0000
3 ENSMUSG00000003546 Klc4 kinesin light chain 4 5.7137 0.0000
4 ENSMUSG00000105291 Gm18901 predicted gene, 18901 5.6147 0.0000
5 ENSMUSG00000105309 Gm21461 predicted gene, 21461 5.5850 0.0000
6 ENSMUSG00000031927 1700012B09Rik RIKEN cDNA 1700012B09 gene 5.5698 0.0000
7 ENSMUSG00000067610 Klri1 killer cell lectin-like receptor family I member 1 5.5691 0.0000
8 ENSMUSG00000009585 Apobec3 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3 5.5546 0.0000
9 ENSMUSG00000064550 Gm24623 predicted gene, 24623 5.4131 0.0000
10 ENSMUSG00000105871 Gm43147 predicted gene 43147 5.4131 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000056004 9330182L06Rik RIKEN cDNA 9330182L06 gene -4.0698 0.0000
50599 ENSMUSG00000086900 Kcnab3os potassium voltage-gated channel, shaker-related subfamily, beta member 3, opposite strand -4.0697 0.0000
50598 ENSMUSG00000018470 Kcnab3 potassium voltage-gated channel, shaker-related subfamily, beta member 3 -4.0697 0.0000
50597 ENSMUSG00000027276 Jag1 jagged 1 -4.0696 0.0000
50596 ENSMUSG00000003354 Ccdc65 coiled-coil domain containing 65 -4.0686 0.0010
50595 ENSMUSG00000106905 Gm42741 predicted gene 42741 -4.0682 0.0000
50594 ENSMUSG00000030350 Prmt8 protein arginine N-methyltransferase 8 -4.0682 0.0000
50593 ENSMUSG00000030780 BC017158 cDNA sequence BC017158 -4.0672 0.0000
50592 ENSMUSG00000054934 Kcnmb4 potassium large conductance calcium-activated channel, subfamily M, beta member 4 -4.0582 0.0141
50591 ENSMUSG00000099230 Mir6989 microRNA 6989 -4.0578 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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