Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370524

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370524


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5030203000000000000000-761Sequence Read ArchiveSRP041257SRP041257_M3Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeSecondary oocyte (Ovarian follicle)MouseGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000084326 Gm12820 predicted gene 12820 2.6598 0.0000
2 ENSMUSG00000091669 Gm17117 predicted gene 17117 2.5850 0.0000
3 ENSMUSG00000100476 Nanog-ps2 Nanog pseudogene 2 2.5850 0.0001
4 ENSMUSG00000108164 Gm43899 predicted gene, 43899 2.5850 0.0001
5 ENSMUSG00000111627 Gm48749 predicted gene, 48749 2.5850 0.0000
6 ENSMUSG00000112019 Gm48748 predicted gene, 48748 2.5850 0.0000
7 ENSMUSG00000104479 Gm10305 predicted gene 10305 2.5538 0.0000
8 ENSMUSG00000050299 Gm9843 predicted gene 9843 2.4642 0.0000
9 ENSMUSG00000080574 Mir466i microRNA 466i 2.4534 0.0000
10 ENSMUSG00000069421 Olfr810 olfactory receptor 810 2.3978 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000032403 2300009A05Rik RIKEN cDNA 2300009A05 gene -1.8348 0.0001
50599 ENSMUSG00000059811 Atl2 atlastin GTPase 2 -1.8345 0.0000
50598 ENSMUSG00000111958 Gm47844 predicted gene, 47844 -1.8340 0.2384
50597 ENSMUSG00000026058 Khdrbs2 KH domain containing, RNA binding, signal transduction associated 2 -1.8332 0.0000
50596 ENSMUSG00000097891 Gm3650 predicted gene 3650 -1.8327 0.0399
50595 ENSMUSG00000038372 Gmds GDP-mannose 4, 6-dehydratase -1.8325 0.0000
50594 ENSMUSG00000039853 Trim14 tripartite motif-containing 14 -1.8318 0.0000
50593 ENSMUSG00000083900 Gm13294 predicted gene 13294 -1.8308 0.0000
50592 ENSMUSG00000083969 Olfr1050-ps1 olfactory receptor 1050, pseudogene 1 -1.8306 0.6144
50591 ENSMUSG00000065539 Mir216a microRNA 216a -1.8306 0.6144

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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