Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370525

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370525


Profile download
5030203000000000000000-761Sequence Read ArchiveSRP041257SRP041257_M4Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeSecondary oocyte (Ovarian follicle)MouseGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000104093 A330015K06Rik RIKEN cDNA A330015K06 gene 2.5850 0.0001
2 ENSMUSG00000105001 Gm47275 predicted gene, 47275 2.3555 0.0000
3 ENSMUSG00000083490 Gm14940 predicted gene 14940 2.3219 0.0005
4 ENSMUSG00000098085 Gm8919 predicted gene 8919 2.3219 0.0005
5 ENSMUSG00000100632 9430060I03Rik RIKEN cDNA 9430060I03 gene 2.3219 0.0000
6 ENSMUSG00000103706 6820402A03Rik RIKEN cDNA 6820402A03 gene 2.3219 0.0000
7 ENSMUSG00000031197 Vbp1 von Hippel-Lindau binding protein 1 2.1610 0.0000
8 ENSMUSG00000106058 Gm43013 predicted gene 43013 2.0047 0.0000
9 ENSMUSG00000025939 Ube2w ubiquitin-conjugating enzyme E2W (putative) 2.0000 0.0000
10 ENSMUSG00000034732 Pabpc5 poly(A) binding protein, cytoplasmic 5 2.0000 0.0034

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000094482 Vmn2r-ps8 vomeronasal 2, receptor, pseudogene 8 -1.5850 1.0000
50599 ENSMUSG00000094422 Olfr205 olfactory receptor 205 -1.5850 1.0000
50598 ENSMUSG00000094349 Gm8082 predicted gene 8082 -1.5850 1.0000
50597 ENSMUSG00000094253 Mir3471-2 microRNA 3471-2 -1.5850 1.0000
50596 ENSMUSG00000094218 Gm23446 predicted gene, 23446 -1.5850 1.0000
50593 ENSMUSG00000094109 Gm22776 predicted gene, 22776 -1.5850 1.0000
50592 ENSMUSG00000094079 Rpl23a-ps12 ribosomal protein L23A, pseudogene 12 -1.5850 1.0000
50591 ENSMUSG00000094025 Gm8879 predicted gene 8879 -1.5850 1.0000
10 ENSMUSG00000034732 Pabpc5 poly(A) binding protein, cytoplasmic 5 2.0000 0.0034
9 ENSMUSG00000025939 Ube2w ubiquitin-conjugating enzyme E2W (putative) 2.0000 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...