Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370527

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370527


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5030203000000000000000-761Sequence Read ArchiveSRP041257SRP041257_M6Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeSecondary oocyte (Ovarian follicle)MouseGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000086244 4930558G05Rik RIKEN cDNA 4930558G05 gene 2.5850 0.0001
2 ENSMUSG00000095097 Gm23658 predicted gene, 23658 2.5850 0.0000
3 ENSMUSG00000096386 Vmn1r100 vomeronasal 1 receptor 100 2.5850 0.0001
4 ENSMUSG00000104890 Mir3084-1 microRNA 3084-1 2.5850 0.0000
5 ENSMUSG00000052217 Hbb-bh1 hemoglobin Z, beta-like embryonic chain 2.3219 0.0005
6 ENSMUSG00000078621 Hbb-bh2 hemoglobin beta, bh2 2.3219 0.0005
7 ENSMUSG00000081033 Gm14797 predicted gene 14797 2.3219 0.0005
8 ENSMUSG00000085481 Gm16304 predicted gene 16304 2.3219 0.0000
9 ENSMUSG00000099960 Gm28590 predicted gene 28590 2.3219 0.0005
10 ENSMUSG00000102925 Gm37150 predicted gene, 37150 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000045608 Dbx2 developing brain homeobox 2 -1.7306 0.0000
50599 ENSMUSG00000109698 Gm45469 predicted gene 45469 -1.7303 0.0000
50598 ENSMUSG00000078208 Fthl17b ferritin, heavy polypeptide-like 17, member B -1.7302 0.0000
50597 ENSMUSG00000085265 Nell1os NEL-like 1, opposite strand -1.7297 1.0000
50596 ENSMUSG00000098104 Gm6085 predicted gene 6085 -1.7295 0.0000
50595 ENSMUSG00000076431 Sox4 SRY (sex determining region Y)-box 4 -1.7280 0.0000
50594 ENSMUSG00000020361 Hspa4 heat shock protein 4 -1.7278 0.0000
50593 ENSMUSG00000038372 Gmds GDP-mannose 4, 6-dehydratase -1.7272 0.0000
50592 ENSMUSG00000034957 Cebpa CCAAT/enhancer binding protein (C/EBP), alpha -1.7268 0.0000
50591 ENSMUSG00000103287 1700034J04Rik RIKEN cDNA 1700034J04 gene -1.7268 0.0045

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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