Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370528

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370528


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5030203000000000000000-761Sequence Read ArchiveSRP041257SRP041257_M7Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeSecondary oocyte (Ovarian follicle)MouseGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000004542 Psg19 pregnancy specific glycoprotein 19 2.0000 0.0032
2 ENSMUSG00000049882 Vcpkmt valosin containing protein lysine (K) methyltransferase 2.0000 0.0032
3 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 2.0000 0.0032
4 ENSMUSG00000088184 Gm23137 predicted gene, 23137 2.0000 0.0032
5 ENSMUSG00000093385 A330044P14Rik RIKEN cDNA A330044P14 gene 2.0000 0.0032
6 ENSMUSG00000096499 Ighv1-5 immunoglobulin heavy variable V1-5 2.0000 0.0000
7 ENSMUSG00000098357 Mir7094-2 microRNA 7094-2 2.0000 0.0000
8 ENSMUSG00000098943 Rnu3b1 U3B small nuclear RNA 1 2.0000 0.0032
9 ENSMUSG00000099611 Vmn1r189 vomeronasal 1 receptor 189 2.0000 0.0032
10 ENSMUSG00000105025 Rnu3b1 U3B small nuclear RNA 1 2.0000 0.0032

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000074738 Fndc10 fibronectin type III domain containing 10 -1.5353 0.0048
50599 ENSMUSG00000050439 Enthd1 ENTH domain containing 1 -1.5318 0.0615
50598 ENSMUSG00000031740 Mmp2 matrix metallopeptidase 2 -1.5288 0.3859
50597 ENSMUSG00000100515 Gm17916 predicted gene, 17916 -1.5283 0.6036
50595 ENSMUSG00000091040 Gm9359 predicted gene 9359 -1.5283 0.7082
50594 ENSMUSG00000086641 Gm13663 predicted gene 13663 -1.5283 0.6018
50593 ENSMUSG00000084794 Gm13662 predicted gene 13662 -1.5283 0.6018
50592 ENSMUSG00000037010 Apln apelin -1.5283 0.6036
50591 ENSMUSG00000034486 Gbx2 gastrulation brain homeobox 2 -1.5244 0.0004
10 ENSMUSG00000105025 Rnu3b1 U3B small nuclear RNA 1 2.0000 0.0032

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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