Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370529

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370529


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5030203000000000000000-761Sequence Read ArchiveSRP041257SRP041257_M8Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeSecondary oocyte (Ovarian follicle)MouseGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105290 Gm43528 predicted gene 43528 4.7004 0.0000
2 ENSMUSG00000101031 Ms4a12 membrane-spanning 4-domains, subfamily A, member 12 2.5850 0.0001
3 ENSMUSG00000084706 Gm22987 predicted gene, 22987 2.5184 0.0000
4 ENSMUSG00000109354 Olfr706 olfactory receptor 706 2.3502 0.0000
5 ENSMUSG00000085856 Gm12050 predicted gene 12050 2.3219 0.0005
6 ENSMUSG00000081283 Vmn1r-ps104 vomeronasal 1 receptor, pseudogene 104 2.3023 0.0000
7 ENSMUSG00000064208 Gm10145 predicted gene 10145 2.1073 0.0000
8 ENSMUSG00000089987 Gpx2-ps1 glutathione peroxidase 2, pseudogene 1 2.0878 0.0000
9 ENSMUSG00000101014 Gm28289 predicted gene 28289 2.0060 0.0000
10 ENSMUSG00000060701 Fpr-rs3 formyl peptide receptor, related sequence 3 2.0000 0.0032

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000094190 Gm25451 predicted gene, 25451 -1.5850 0.6014
50599 ENSMUSG00000094165 Gm26073 predicted gene, 26073 -1.5850 0.3761
50598 ENSMUSG00000094117 Igkv3-12 immunoglobulin kappa variable 3-12 -1.5850 1.0000
50597 ENSMUSG00000093939 Trav4d-3 T cell receptor alpha variable 4D-3 -1.5850 1.0000
50596 ENSMUSG00000093874 Gm24539 predicted gene, 24539 -1.5850 1.0000
50595 ENSMUSG00000093184 Gm25693 predicted gene, 25693 -1.5850 0.6014
50594 ENSMUSG00000093056 Gm24812 predicted gene, 24812 -1.5850 1.0000
50593 ENSMUSG00000092242 Gm20515 predicted gene 20515 -1.5850 1.0000
50592 ENSMUSG00000091882 Gm6337 predicted gene 6337 -1.5850 1.0000
50591 ENSMUSG00000091048 Gm8207 predicted gene 8207 -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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