Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370530

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370530


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5030203000000000000000-761Sequence Read ArchiveSRP041257SRP041257_M9Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeSecondary oocyte (Ovarian follicle)MouseGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109354 Olfr706 olfactory receptor 706 4.3923 0.0000
2 ENSMUSG00000105566 Obox4-ps4 oocyte specific homeobox 4, pseudogene 4 3.0000 0.0000
3 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 2.8074 0.0000
4 ENSMUSG00000089307 Gm24843 predicted gene, 24843 2.5850 0.0001
5 ENSMUSG00000098115 Gm8816 predicted gene 8816 2.5850 0.0001
6 ENSMUSG00000082994 Gm11848 predicted gene 11848 2.3900 0.0000
7 ENSMUSG00000055430 Nap1l5 nucleosome assembly protein 1-like 5 2.3219 0.0000
8 ENSMUSG00000080903 Gm16383 predicted gene 16383 2.3219 0.0007
9 ENSMUSG00000082005 Gm7189 predicted pseudogene 7189 2.3219 0.0007
10 ENSMUSG00000098110 Gm26956 predicted gene, 26956 2.3219 0.0007

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000101894 1700016P04Rik RIKEN cDNA 1700016P04 gene -1.5850 1.0000
50599 ENSMUSG00000101817 Gm28288 predicted gene 28288 -1.5850 1.0000
50597 ENSMUSG00000101573 Gm28361 predicted gene 28361 -1.5850 1.0000
50596 ENSMUSG00000101453 Gm28189 predicted gene 28189 -1.5850 1.0000
50595 ENSMUSG00000101410 Gm28581 predicted gene 28581 -1.5850 0.3818
50594 ENSMUSG00000101342 Gm28078 predicted gene 28078 -1.5850 0.5984
50593 ENSMUSG00000101262 Gm8326 predicted gene 8326 -1.5850 1.0000
50592 ENSMUSG00000101248 Scgb1b9-ps secretoglobin, family 1B, member 9, pseudogene -1.5850 1.0000
50591 ENSMUSG00000101203 Gm28615 predicted gene 28615 -1.5850 1.0000
10 ENSMUSG00000098110 Gm26956 predicted gene, 26956 2.3219 0.0007

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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