Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370533

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370533


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5030203000000000000000-761Sequence Read ArchiveSRP041257SRP041257_M12Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeSecondary oocyte (Ovarian follicle)MouseGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109354 Olfr706 olfactory receptor 706 4.8074 0.0000
2 ENSMUSG00000105566 Obox4-ps4 oocyte specific homeobox 4, pseudogene 4 3.0000 0.0000
4 ENSMUSG00000103509 Gm38372 predicted gene, 38372 2.6340 0.0000
5 ENSMUSG00000107745 Gm43917 predicted gene, 43917 2.5850 0.0000
6 ENSMUSG00000089589 Gm23343 predicted gene, 23343 2.4594 0.0000
7 ENSMUSG00000088654 Gm24850 predicted gene, 24850 2.3900 0.0000
8 ENSMUSG00000081531 Vmn1r-ps113 vomeronasal 1 receptor, pseudogene 113 2.3219 0.0006
9 ENSMUSG00000093385 A330044P14Rik RIKEN cDNA A330044P14 gene 2.3219 0.0006
10 ENSMUSG00000110047 A230085B16Rik RIKEN cDNA A230085B16 gene 2.3219 0.0000
50591 ENSMUSG00000104757 Gm44391 predicted gene, 44391 -1.5850 1.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000105365 Mir669a-10 microRNA 669a-10 -1.5850 1.0000
50599 ENSMUSG00000105184 Gm42537 predicted gene 42537 -1.5850 1.0000
50598 ENSMUSG00000105168 Gm30735 predicted gene, 30735 -1.5850 0.5997
50597 ENSMUSG00000105143 Gm8069 predicted pseudogene 8069 -1.5850 1.0000
50596 ENSMUSG00000105126 Gm43723 predicted gene 43723 -1.5850 1.0000
50595 ENSMUSG00000105121 Gm43406 predicted gene 43406 -1.5850 0.2341
50594 ENSMUSG00000104919 Gm42617 predicted gene 42617 -1.5850 1.0000
50593 ENSMUSG00000104873 Gm40332 predicted gene, 40332 -1.5850 1.0000
50592 ENSMUSG00000104792 Gm43308 predicted gene 43308 -1.5850 1.0000
50591 ENSMUSG00000104757 Gm44391 predicted gene, 44391 -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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