Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370535

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370535


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M13Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105290 Gm43528 predicted gene 43528 5.3576 0.0000
2 ENSMUSG00000112452 Gm48075 predicted gene, 48075 3.9069 0.0000
3 ENSMUSG00000104688 Gm18702 predicted gene, 18702 2.5850 0.0017
4 ENSMUSG00000066030 Oog2 oogenesin 2 2.3219 0.0062
5 ENSMUSG00000108070 Gm43872 predicted gene, 43872 2.3219 0.0062
6 ENSMUSG00000112691 Gm8681 predicted gene 8681 2.2146 0.0000
7 ENSMUSG00000067186 Olfr132 olfactory receptor 132 2.0984 0.0000
8 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 2.0850 0.0000
9 ENSMUSG00000016529 Il10 interleukin 10 2.0000 0.0222
10 ENSMUSG00000022061 Nkx3-1 NK3 homeobox 1 2.0000 0.0005

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000100000 1700023F02Rik RIKEN cDNA 1700023F02 gene -1.5850 1.0000
50599 ENSMUSG00000099930 Gm2396 predicted gene 2396 -1.5850 1.0000
50598 ENSMUSG00000099897 Gm28426 predicted gene 28426 -1.5850 1.0000
50597 ENSMUSG00000099865 Gm29206 predicted gene 29206 -1.5850 1.0000
50596 ENSMUSG00000099780 Gm29537 predicted gene 29537 -1.5850 1.0000
50595 ENSMUSG00000099729 Scgb2b11 secretoglobin, family 2B, member 11 -1.5850 0.5822
50594 ENSMUSG00000099633 Gm29071 predicted gene 29071 -1.5850 1.0000
50593 ENSMUSG00000099496 Gm28365 predicted gene 28365 -1.5850 1.0000
50592 ENSMUSG00000099312 Gm27733 predicted gene, 27733 -1.5850 0.5822
50591 ENSMUSG00000098552 Gm27217 predicted gene 27217 -1.5850 0.1946

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...