Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370536

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370536


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M14Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109354 Olfr706 olfactory receptor 706 3.8074 0.0000
2 ENSMUSG00000103384 Gm37753 predicted gene, 37753 3.1699 0.0000
3 ENSMUSG00000103707 Pcdha6 protocadherin alpha 6 3.1699 0.0000
4 ENSMUSG00000059273 Zc3h4 zinc finger CCCH-type containing 4 2.3999 0.0000
5 ENSMUSG00000109781 Gm45509 predicted gene 45509 2.3999 0.0000
6 ENSMUSG00000110181 Gm45508 predicted gene 45508 2.3999 0.0000
7 ENSMUSG00000090385 Gm7316 predicted gene 7316 2.3219 0.0068
8 ENSMUSG00000093385 A330044P14Rik RIKEN cDNA A330044P14 gene 2.3219 0.0068
9 ENSMUSG00000109928 Gm45539 predicted gene 45539 2.3219 0.0068
10 ENSMUSG00000029865 Sval1 seminal vesicle antigen-like 1 2.0000 0.0236

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000076677 Ighv6-3 immunoglobulin heavy variable 6-3 -1.5850 1.0000
50599 ENSMUSG00000076545 Igkv4-72 immunoglobulin kappa chain variable 4-72 -1.5850 1.0000
50598 ENSMUSG00000076389 Gm23192 predicted gene, 23192 -1.5850 1.0000
50597 ENSMUSG00000075217 Fads2b fatty acid desaturase 2B -1.5850 1.0000
50596 ENSMUSG00000075100 Olfr1223 olfactory receptor 1223 -1.5850 1.0000
50595 ENSMUSG00000074867 Zfp808 zinc finger protein 808 -1.5850 0.1921
50594 ENSMUSG00000074629 4930518I15Rik RIKEN cDNA 4930518I15 gene -1.5850 0.5838
50593 ENSMUSG00000074237 Gm10650 predicted gene 10650 -1.5850 1.0000
50592 ENSMUSG00000073769 Olfr1331 olfactory receptor 1331 -1.5850 0.5838
50591 ENSMUSG00000073018 Gm1070 predicted gene 1070 -1.5850 0.1152

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...