Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370537

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370537


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M15Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000040370 Etfrf1 electron transfer flavoprotein regulatory factor 1 4.6439 0.0000
2 ENSMUSG00000053678 Defb40 defensin beta 40 4.6439 0.0000
3 ENSMUSG00000109354 Olfr706 olfactory receptor 706 3.4164 0.0000
4 ENSMUSG00000081531 Vmn1r-ps113 vomeronasal 1 receptor, pseudogene 113 3.3219 0.0001
5 ENSMUSG00000055782 Abcd2 ATP-binding cassette, sub-family D (ALD), member 2 3.1699 0.0000
6 ENSMUSG00000093385 A330044P14Rik RIKEN cDNA A330044P14 gene 2.8074 0.0017
7 ENSMUSG00000110158 Gm45690 predicted gene 45690 2.8074 0.0017
8 ENSMUSG00000029096 Htra3 HtrA serine peptidase 3 2.5850 0.0050
10 ENSMUSG00000025283 Sat1 spermidine/spermine N1-acetyl transferase 1 2.3219 0.0143
50591 ENSMUSG00000088582 Gm22966 predicted gene, 22966 -1.5850 0.5474

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000091627 Gm5929 predicted gene 5929 -1.5850 0.5474
50599 ENSMUSG00000091378 Gm4219 predicted gene 4219 -1.5850 0.0000
50598 ENSMUSG00000091329 1700112D23Rik RIKEN cDNA 1700112D23 gene -1.5850 0.0113
50597 ENSMUSG00000090779 Gm17110 predicted gene 17110 -1.5850 0.5474
50596 ENSMUSG00000089978 Crb1-ps crumbs family member 1, photoreceptor morphogenesis associated, pseudogene -1.5850 0.5474
50595 ENSMUSG00000089459 Gm24222 predicted gene, 24222 -1.5850 0.5474
50594 ENSMUSG00000089310 Gm23181 predicted gene, 23181 -1.5850 0.5474
50593 ENSMUSG00000089119 Gm25901 predicted gene, 25901 -1.5850 0.3056
50592 ENSMUSG00000088823 Gm25226 predicted gene, 25226 -1.5850 0.5474
50591 ENSMUSG00000088582 Gm22966 predicted gene, 22966 -1.5850 0.5474

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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