Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370538

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370538


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M16Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109354 Olfr706 olfactory receptor 706 5.4919 0.0000
2 ENSMUSG00000040370 Etfrf1 electron transfer flavoprotein regulatory factor 1 5.2479 0.0000
3 ENSMUSG00000102836 Gm37013 predicted gene, 37013 3.8074 0.0000
4 ENSMUSG00000103125 Gm37388 predicted gene, 37388 3.8074 0.0000
5 ENSMUSG00000103384 Gm37753 predicted gene, 37753 3.8074 0.0000
6 ENSMUSG00000103707 Pcdha6 protocadherin alpha 6 3.8074 0.0000
7 ENSMUSG00000104318 Pcdha7 protocadherin alpha 7 3.8074 0.0000
8 ENSMUSG00000047419 Cmya5 cardiomyopathy associated 5 3.3219 0.0000
9 ENSMUSG00000064570 Gm25800 predicted gene, 25800 3.0000 0.0000
10 ENSMUSG00000083668 Gm5648 predicted pseudogene 5648 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000112631 Gm48555 predicted gene, 48555 -1.5850 0.3488
50599 ENSMUSG00000112541 Gm9072 predicted gene 9072 -1.5850 1.0000
50598 ENSMUSG00000112318 Gm6721 predicted gene 6721 -1.5850 1.0000
50597 ENSMUSG00000112248 Gm47910 predicted gene, 47910 -1.5850 1.0000
50596 ENSMUSG00000112235 Gm48307 predicted gene, 48307 -1.5850 1.0000
50595 ENSMUSG00000112210 4930407I19Rik RIKEN cDNA 4930407I19 gene -1.5850 1.0000
50594 ENSMUSG00000112042 Gm47402 predicted gene, 47402 -1.5850 1.0000
50593 ENSMUSG00000111938 2900045O20Rik RIKEN cDNA 2900045O20 gene -1.5850 1.0000
50592 ENSMUSG00000111917 Gm48793 predicted gene, 48793 -1.5850 0.5812
10 ENSMUSG00000083668 Gm5648 predicted pseudogene 5648 2.8074 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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