Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370539

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370539


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M17Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000069390 Olfr707 olfactory receptor 707 5.2479 0.0000
2 ENSMUSG00000081531 Vmn1r-ps113 vomeronasal 1 receptor, pseudogene 113 3.5850 0.0000
3 ENSMUSG00000078784 Rbis ribosomal biogenesis factor 3.4594 0.0000
4 ENSMUSG00000027801 Tm4sf4 transmembrane 4 superfamily member 4 2.8074 0.0007
5 ENSMUSG00000089849 Runx2os2 runt related transcription factor 2, opposite strand 2 2.8074 0.0007
6 ENSMUSG00000105218 Gm38413 predicted gene, 38413 2.7611 0.0000
7 ENSMUSG00000103465 Gm37617 predicted gene, 37617 2.5850 0.0022
8 ENSMUSG00000004542 Psg19 pregnancy specific glycoprotein 19 2.3219 0.0075
9 ENSMUSG00000031355 Arhgap6 Rho GTPase activating protein 6 2.3219 0.0000
10 ENSMUSG00000077473 Gm24790 predicted gene, 24790 2.3219 0.0075

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000096574 Gm2956 predicted gene 2956 -1.5993 0.0000
50599 ENSMUSG00000080972 Gm16061 predicted gene 16061 -1.5990 0.0000
50598 ENSMUSG00000109198 D7Bwg0826e DNA segment, Chr 7, Brigham & Women's Genetics 0826 expressed -1.5988 0.0000
50597 ENSMUSG00000086324 Gm15564 predicted gene 15564 -1.5976 0.0006
50596 ENSMUSG00000105981 2810428J06Rik RIKEN cDNA 2810428J06 gene -1.5975 0.0000
50595 ENSMUSG00000069136 A130006I12Rik RIKEN cDNA A130006I12 gene -1.5968 0.0000
50594 ENSMUSG00000085055 Gm15958 predicted gene 15958 -1.5966 0.0000
50593 ENSMUSG00000082745 Gm15181 predicted gene 15181 -1.5964 0.0000
50592 ENSMUSG00000085015 Gm14424 predicted gene 14424 -1.5963 0.0000
50591 ENSMUSG00000002014 Ssr4 signal sequence receptor, delta -1.5951 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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