Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370540

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370540


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M18Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000069390 Olfr707 olfactory receptor 707 6.3038 0.0000
2 ENSMUSG00000109354 Olfr706 olfactory receptor 706 6.3038 0.0000
3 ENSMUSG00000053678 Defb40 defensin beta 40 5.3219 0.0000
4 ENSMUSG00000089589 Gm23343 predicted gene, 23343 4.1699 0.0000
5 ENSMUSG00000026285 Pdcd1 programmed cell death 1 4.0646 0.0000
6 ENSMUSG00000110158 Gm45690 predicted gene 45690 3.8074 0.0000
7 ENSMUSG00000055782 Abcd2 ATP-binding cassette, sub-family D (ALD), member 2 3.5516 0.0000
8 ENSMUSG00000082886 Gm5386 predicted pseudogene 5386 3.3219 0.0000
9 ENSMUSG00000098114 Gm26957 predicted gene, 26957 3.3219 0.0000
10 ENSMUSG00000103465 Gm37617 predicted gene, 37617 3.1699 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000081499 Gm12517 predicted gene 12517 -1.7740 0.6091
50599 ENSMUSG00000075113 Olfr1209 olfactory receptor 1209 -1.7740 0.6264
50598 ENSMUSG00000024727 Trpm6 transient receptor potential cation channel, subfamily M, member 6 -1.7723 0.0436
50597 ENSMUSG00000084786 Ubl5 ubiquitin-like 5 -1.7704 0.0000
50596 ENSMUSG00000109642 Gm45289 predicted gene 45289 -1.7702 0.7207
50595 ENSMUSG00000042460 C1galt1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 -1.7693 0.0004
50594 ENSMUSG00000075176 Olfr1085 olfactory receptor 1085 -1.7692 0.6166
50593 ENSMUSG00000031757 Mt4 metallothionein 4 -1.7692 0.6166
50592 ENSMUSG00000026623 Lpgat1 lysophosphatidylglycerol acyltransferase 1 -1.7681 0.0000
50591 ENSMUSG00000003380 Rabac1 Rab acceptor 1 (prenylated) -1.7673 0.0004

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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