Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370542

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370542


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M20Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000028792 Ak2 adenylate kinase 2 6.4919 0.0000
2 ENSMUSG00000040370 Etfrf1 electron transfer flavoprotein regulatory factor 1 5.0444 0.0000
3 ENSMUSG00000100580 4933436I20Rik RIKEN cDNA 4933436I20 gene 4.5236 0.0000
4 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 3.8074 0.0000
5 ENSMUSG00000085582 3110099E03Rik RIKEN cDNA 3110099E03 gene 2.5850 0.0001
6 ENSMUSG00000025868 Higd2a HIG1 domain family, member 2A 2.3219 0.0004
7 ENSMUSG00000025869 Nop16 NOP16 nucleolar protein 2.3219 0.0004
8 ENSMUSG00000091605 Gm8256 predicted gene 8256 2.3219 0.0000
9 ENSMUSG00000069390 Olfr707 olfactory receptor 707 2.2618 0.0000
10 ENSMUSG00000106010 Gm42616 predicted gene 42616 2.0437 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000103369 Gm6546 predicted gene 6546 -1.6038 0.2234
50599 ENSMUSG00000038010 Ccdc138 coiled-coil domain containing 138 -1.6008 0.0047
50598 ENSMUSG00000103179 Gm37171 predicted gene, 37171 -1.6000 0.3810
50597 ENSMUSG00000002329 Mdp1 magnesium-dependent phosphatase 1 -1.6000 0.3810
50596 ENSMUSG00000078157 Fem1al fem-1 homolog A like -1.5997 0.0001
50595 ENSMUSG00000033420 Antxr1 anthrax toxin receptor 1 -1.5993 0.0000
50594 ENSMUSG00000031016 Wee1 WEE 1 homolog 1 (S. pombe) -1.5992 0.0072
50593 ENSMUSG00000050490 Psma5-ps proteasome subunit alpha 5, pseudogene -1.5989 0.0110
50592 ENSMUSG00000041205 Map6d1 MAP6 domain containing 1 -1.5982 0.0000
50591 ENSMUSG00000088498 Gm24402 predicted gene, 24402 -1.5975 0.2378

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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