Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370543

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370543


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M21Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109539 Gm44667 predicted gene 44667 3.7004 0.0000
2 ENSMUSG00000104318 Pcdha7 protocadherin alpha 7 3.4594 0.0000
3 ENSMUSG00000101818 Gm28269 predicted gene 28269 3.1699 0.0000
4 ENSMUSG00000098114 Gm26957 predicted gene, 26957 3.0000 0.0000
5 ENSMUSG00000071753 Cdr1os cerebellar degeneration related antigen 1, opposite strand 2.3219 0.0027
6 ENSMUSG00000108512 Gm7238 predicted gene 7238 2.3219 0.0027
7 ENSMUSG00000015405 Ace2 angiotensin I converting enzyme (peptidyl-dipeptidase A) 2 2.0000 0.0119
8 ENSMUSG00000047728 Ly6g2 lymphocyte antigen 6 complex, locus G2 2.0000 0.0119
9 ENSMUSG00000054640 Slc8a1 solute carrier family 8 (sodium/calcium exchanger), member 1 2.0000 0.0119
10 ENSMUSG00000081577 Gm13455 predicted gene 13455 2.0000 0.0119

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000093383 Gm20642 predicted gene 20642 -1.5850 0.3479
50599 ENSMUSG00000093128 Gm24369 predicted gene, 24369 -1.5850 1.0000
50598 ENSMUSG00000092957 Gm26219 predicted gene, 26219 -1.5850 1.0000
50597 ENSMUSG00000092732 Gm24025 predicted gene, 24025 -1.5850 1.0000
50596 ENSMUSG00000092422 Vmn2r-ps65 vomeronasal 2, receptor, pseudogene 65 -1.5850 1.0000
50595 ENSMUSG00000092389 Gm20483 predicted gene 20483 -1.5850 0.3479
50594 ENSMUSG00000092312 Zfp419 zinc finger protein 419 -1.5850 1.0000
50593 ENSMUSG00000092199 Gm18358 predicted gene, 18358 -1.5850 1.0000
50592 ENSMUSG00000092031 Gm2108 predicted gene 2108 -1.5850 1.0000
50591 ENSMUSG00000091754 Gm3636 predicted gene 3636 -1.5850 0.5803

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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