Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370544

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370544


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M22Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000053678 Defb40 defensin beta 40 5.0444 0.0000
2 ENSMUSG00000072964 Bhlhb9 basic helix-loop-helix domain containing, class B9 4.2479 0.0000
3 ENSMUSG00000105290 Gm43528 predicted gene 43528 4.0444 0.0000
4 ENSMUSG00000110158 Gm45690 predicted gene 45690 3.3219 0.0000
5 ENSMUSG00000096535 Gm24755 predicted gene, 24755 3.0000 0.0000
6 ENSMUSG00000098114 Gm26957 predicted gene, 26957 2.8074 0.0001
7 ENSMUSG00000082886 Gm5386 predicted pseudogene 5386 2.5850 0.0003
8 ENSMUSG00000081531 Vmn1r-ps113 vomeronasal 1 receptor, pseudogene 113 2.4726 0.0000
9 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 2.4726 0.0000
10 ENSMUSG00000031105 Slc25a14 solute carrier family 25 (mitochondrial carrier, brain), member 14 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000108139 Gm44055 predicted gene, 44055 -1.5850 1.0000
50599 ENSMUSG00000108099 Gm43988 predicted gene, 43988 -1.5850 0.6084
50598 ENSMUSG00000108069 Hspd1-ps1 heat shock protein 1 (chaperonin), pseudogene 1 -1.5850 1.0000
50597 ENSMUSG00000107836 Gm5315 predicted gene 5315 -1.5850 1.0000
50596 ENSMUSG00000107511 Gm44440 predicted gene, 44440 -1.5850 0.6084
50595 ENSMUSG00000107498 Gm44240 predicted gene, 44240 -1.5850 0.5888
50594 ENSMUSG00000107306 Gm42577 predicted gene 42577 -1.5850 1.0000
50593 ENSMUSG00000107164 4933425D22Rik RIKEN cDNA 4933425D22 gene -1.5850 0.1424
50592 ENSMUSG00000107100 Gm18482 predicted gene, 18482 -1.5850 1.0000
50591 ENSMUSG00000107082 Gm36378 predicted gene, 36378 -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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