Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370545

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370545


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M23Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105218 Gm38413 predicted gene, 38413 3.1699 0.0000
2 ENSMUSG00000031355 Arhgap6 Rho GTPase activating protein 6 3.0000 0.0000
3 ENSMUSG00000069390 Olfr707 olfactory receptor 707 2.8074 0.0000
4 ENSMUSG00000081531 Vmn1r-ps113 vomeronasal 1 receptor, pseudogene 113 2.8074 0.0000
5 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 2.8074 0.0000
6 ENSMUSG00000110158 Gm45690 predicted gene 45690 2.8074 0.0000
7 ENSMUSG00000025758 Plk4 polo like kinase 4 2.5850 0.0003
8 ENSMUSG00000065068 n-R5s5 nuclear encoded rRNA 5S 5 2.5850 0.0003
9 ENSMUSG00000107681 4930528H21Rik RIKEN cDNA 4930528H21 gene 2.5850 0.0003
10 ENSMUSG00000091881 Gm17146 predicted gene 17146 2.5646 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000045631 Tmprss12 transmembrane (C-terminal) protease, serine 12 -2.0000 1.0000
50599 ENSMUSG00000045479 Olfr459 olfactory receptor 459 -2.0000 0.6029
50598 ENSMUSG00000044213 Olfr1094 olfactory receptor 1094 -2.0000 1.0000
50597 ENSMUSG00000044080 S100a1 S100 calcium binding protein A1 -2.0000 0.0088
50596 ENSMUSG00000042312 S100a13 S100 calcium binding protein A13 -2.0000 0.0088
50595 ENSMUSG00000039676 Capsl calcyphosine-like -2.0000 1.0000
50594 ENSMUSG00000039018 Mtg1 mitochondrial ribosome-associated GTPase 1 -2.0000 0.6029
50593 ENSMUSG00000037979 Ccdc92 coiled-coil domain containing 92 -2.0000 1.0000
50592 ENSMUSG00000031610 Scrg1 scrapie responsive gene 1 -2.0000 1.0000
50591 ENSMUSG00000031424 Kir3dl1 killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 1 -2.0000 0.2226

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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