Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370556

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370556


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M26Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105290 Gm43528 predicted gene 43528 5.0444 0.0000
2 ENSMUSG00000100580 4933436I20Rik RIKEN cDNA 4933436I20 gene 3.9069 0.0000
3 ENSMUSG00000026285 Pdcd1 programmed cell death 1 3.7657 0.0000
4 ENSMUSG00000109539 Gm44667 predicted gene 44667 3.3219 0.0014
5 ENSMUSG00000022962 Gart phosphoribosylglycinamide formyltransferase 2.7459 0.0000
6 ENSMUSG00000078784 Rbis ribosomal biogenesis factor 2.5850 0.0258
7 ENSMUSG00000081531 Vmn1r-ps113 vomeronasal 1 receptor, pseudogene 113 2.5850 0.0258
8 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 2.5850 0.0258
9 ENSMUSG00000101242 Gm28319 predicted gene 28319 2.5850 0.0258
10 ENSMUSG00000102569 Gm37041 predicted gene, 37041 2.5850 0.0007

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000022494 Shisa9 shisa family member 9 -1.4992 0.0000
50599 ENSMUSG00000020561 Twistnb twist basic helix-loop-helix transcription factor 1 neighbor -1.4983 0.0000
50598 ENSMUSG00000073752 Gm10570 predicted gene 10570 -1.4976 0.0000
50597 ENSMUSG00000028773 Fabp3 fatty acid binding protein 3, muscle and heart -1.4976 0.0000
50596 ENSMUSG00000020328 Nudcd2 NudC domain containing 2 -1.4970 0.0000
50595 ENSMUSG00000031314 Taf1 TATA-box binding protein associated factor 1 -1.4962 0.0000
50594 ENSMUSG00000103400 Gm15853 predicted gene 15853 -1.4954 0.0000
50591 ENSMUSG00000022978 Mis18a MIS18 kinetochore protein A -1.4946 0.0000
10 ENSMUSG00000102569 Gm37041 predicted gene, 37041 2.5850 0.0007
9 ENSMUSG00000101242 Gm28319 predicted gene 28319 2.5850 0.0258

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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