Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370559

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370559


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M29Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000053678 Defb40 defensin beta 40 4.9069 0.0000
2 ENSMUSG00000101242 Gm28319 predicted gene 28319 3.3219 0.0006
3 ENSMUSG00000049882 Vcpkmt valosin containing protein lysine (K) methyltransferase 3.0000 0.0030
4 ENSMUSG00000065919 Gm24449 predicted gene, 24449 3.0000 0.0030
5 ENSMUSG00000050813 Olfr332 olfactory receptor 332 2.8074 0.0069
6 ENSMUSG00000077892 Gm22901 predicted gene, 22901 2.8074 0.0069
7 ENSMUSG00000104318 Pcdha7 protocadherin alpha 7 2.8074 0.0069
8 ENSMUSG00000067971 Olfr1321 olfactory receptor 1321 2.6455 0.0000
9 ENSMUSG00000084248 Gm11409 predicted gene 11409 2.4534 0.0006
10 ENSMUSG00000021975 Ints9 integrator complex subunit 9 2.3219 0.0013

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000085708 Gm16063 predicted gene 16063 -1.5850 0.5080
50599 ENSMUSG00000085552 Gm21990 predicted gene 21990 -1.5850 0.5080
50598 ENSMUSG00000085498 Gm14023 predicted gene 14023 -1.5850 0.0000
50597 ENSMUSG00000085451 Gm40614 predicted gene, 40614 -1.5850 0.1370
50596 ENSMUSG00000085174 Gm16206 predicted gene 16206 -1.5850 0.0005
50595 ENSMUSG00000085094 Gm15692 predicted gene 15692 -1.5850 0.5080
50594 ENSMUSG00000084643 Gm24385 predicted gene, 24385 -1.5850 0.5080
50593 ENSMUSG00000084463 Gm22959 predicted gene, 22959 -1.5850 0.5080
50592 ENSMUSG00000083945 Gm15242 predicted gene 15242 -1.5850 0.5080
50591 ENSMUSG00000083914 Rps18-ps1 ribosomal protein S18, pseudogene 1 -1.5850 0.5080

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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