Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370560

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370560


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M30Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109354 Olfr706 olfactory receptor 706 5.1293 0.0000
2 ENSMUSG00000082886 Gm5386 predicted pseudogene 5386 2.8074 0.0000
3 ENSMUSG00000107135 Gm43806 predicted gene 43806 2.8074 0.0000
4 ENSMUSG00000104083 Gm29739 predicted gene, 29739 2.5850 0.0001
5 ENSMUSG00000110158 Gm45690 predicted gene 45690 2.5850 0.0001
6 ENSMUSG00000072574 Gm17184 predicted gene 17184 2.3219 0.0007
7 ENSMUSG00000084441 Gm26255 predicted gene, 26255 2.3219 0.0007
8 ENSMUSG00000085122 4933404K08Rik RIKEN cDNA 4933404K08 gene 2.3219 0.0000
9 ENSMUSG00000091466 Gm17183 predicted gene 17183 2.3219 0.0007
10 ENSMUSG00000106469 C030015E24Rik RIKEN cDNA C030015E24 gene 2.3219 0.0007

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000087750 Gm23468 predicted gene, 23468 -1.6501 0.4146
50599 ENSMUSG00000031358 Msl3 MSL complex subunit 3 -1.6494 0.0000
50598 ENSMUSG00000037933 Bicd2 BICD cargo adaptor 2 -1.6492 0.0000
50597 ENSMUSG00000048347 Pcdhb18 protocadherin beta 18 -1.6489 0.0000
50596 ENSMUSG00000038025 Phf2 PHD finger protein 2 -1.6488 0.0000
50595 ENSMUSG00000078630 Tomt transmembrane O-methyltransferase -1.6487 0.0000
50594 ENSMUSG00000002396 Ocel1 occludin/ELL domain containing 1 -1.6480 0.0000
50593 ENSMUSG00000110326 Gm45378 predicted gene 45378 -1.6463 0.0000
50592 ENSMUSG00000021175 Cdca7l cell division cycle associated 7 like -1.6463 0.0000
50591 ENSMUSG00000092342 Esp31 exocrine gland secreted peptide 31 -1.6462 0.3714

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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