Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370561

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370561


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M31Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109539 Gm44667 predicted gene 44667 4.0000 0.0001
2 ENSMUSG00000112452 Gm48075 predicted gene, 48075 3.8074 0.0004
3 ENSMUSG00000105290 Gm43528 predicted gene 43528 3.5698 0.0000
4 ENSMUSG00000081531 Vmn1r-ps113 vomeronasal 1 receptor, pseudogene 113 3.1699 0.0095
5 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 3.1699 0.0095
6 ENSMUSG00000089994 Gm16239 predicted gene 16239 2.9037 0.0004
7 ENSMUSG00000030887 Pdzd9 PDZ domain containing 9 2.8074 0.0347
8 ENSMUSG00000047344 Lancl3 LanC lantibiotic synthetase component C-like 3 (bacterial) 2.8074 0.0347
9 ENSMUSG00000052005 Gm9864 predicted gene 9864 2.8074 0.0000
10 ENSMUSG00000087677 Gm15226 predicted gene 15226 2.8074 0.0347

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000064489 Gm23296 predicted gene, 23296 -1.5850 0.0019
50599 ENSMUSG00000063434 Sorcs3 sortilin-related VPS10 domain containing receptor 3 -1.5850 0.0001
50598 ENSMUSG00000061991 H2ac10 H2A clustered histone 10 -1.5850 0.2089
50597 ENSMUSG00000061246 Olfr387-ps1 olfactory receptor 387, pseudogene 1 -1.5850 0.2089
50596 ENSMUSG00000060981 H4c8 H4 clustered histone 8 -1.5850 0.2089
50595 ENSMUSG00000056671 Prelid2 PRELI domain containing 2 -1.5850 0.0091
50594 ENSMUSG00000055341 Zfp457 zinc finger protein 457 -1.5850 0.2089
50593 ENSMUSG00000051977 Prdm9 PR domain containing 9 -1.5850 0.2089
50592 ENSMUSG00000051159 Cited1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 -1.5850 0.2089
50591 ENSMUSG00000050332 Amer1 APC membrane recruitment 1 -1.5850 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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