Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370562

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370562


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M32Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000069390 Olfr707 olfactory receptor 707 4.9069 0.0000
2 ENSMUSG00000040370 Etfrf1 electron transfer flavoprotein regulatory factor 1 4.3923 0.0000
3 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 3.5850 0.0011
4 ENSMUSG00000102267 9530003O04Rik RIKEN cDNA 9530003O04 gene 3.3219 0.0042
5 ENSMUSG00000110940 Olfr274-ps1 olfactory receptor 274, pseudogene 1 3.0000 0.0162
6 ENSMUSG00000105290 Gm43528 predicted gene 43528 2.6962 0.0000
7 ENSMUSG00000043384 Gprasp1 G protein-coupled receptor associated sorting protein 1 2.6427 0.0001
8 ENSMUSG00000072964 Bhlhb9 basic helix-loop-helix domain containing, class B9 2.6427 0.0001
9 ENSMUSG00000036036 Zfp57 zinc finger protein 57 2.5850 0.0636
10 ENSMUSG00000104509 Gm33994 predicted gene, 33994 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000028218 Fam92a family with sequence similarity 92, member A -1.2840 0.0000
50599 ENSMUSG00000098388 Mir8109 microRNA 8109 -1.2838 0.0000
50598 ENSMUSG00000102570 Gm37968 predicted gene, 37968 -1.2814 0.0000
50597 ENSMUSG00000107277 Gm10461 predicted gene 10461 -1.2800 0.0000
50596 ENSMUSG00000092914 Gm24084 predicted gene, 24084 -1.2799 0.0000
50595 ENSMUSG00000055531 Cpsf6 cleavage and polyadenylation specific factor 6 -1.2797 0.0000
50594 ENSMUSG00000027602 Map1lc3a microtubule-associated protein 1 light chain 3 alpha -1.2792 0.0000
50593 ENSMUSG00000095798 Gm26298 predicted gene, 26298 -1.2789 0.0000
50592 ENSMUSG00000104569 Gm43054 predicted gene 43054 -1.2779 0.0000
50591 ENSMUSG00000058291 Zfp68 zinc finger protein 68 -1.2749 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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