Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370563

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370563


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M33Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 2.8074 0.0046
2 ENSMUSG00000040254 Sema3d sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D 2.7233 0.0000
3 ENSMUSG00000082886 Gm5386 predicted pseudogene 5386 2.5850 0.0112
4 ENSMUSG00000083425 Gm13992 predicted gene 13992 2.5850 0.0112
5 ENSMUSG00000088596 Gm24602 predicted gene, 24602 2.5850 0.0001
6 ENSMUSG00000032766 Gng11 guanine nucleotide binding protein (G protein), gamma 11 2.3219 0.0275
7 ENSMUSG00000094356 Igkv8-28 immunoglobulin kappa variable 8-28 2.3219 0.0275
8 ENSMUSG00000102167 Gm2345 predicted gene 2345 2.3219 0.0000
9 ENSMUSG00000103465 Gm37617 predicted gene, 37617 2.3219 0.0275
10 ENSMUSG00000106742 Gm42474 predicted gene 42474 2.3219 0.0275

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000024750 Zfand5 zinc finger, AN1-type domain 5 -1.3211 0.0000
50599 ENSMUSG00000099088 Gm27920 predicted gene, 27920 -1.3208 0.0000
50598 ENSMUSG00000031600 Vps37a vacuolar protein sorting 37A -1.3202 0.0000
50597 ENSMUSG00000038840 Birc7 baculoviral IAP repeat-containing 7 (livin) -1.3198 0.0000
50596 ENSMUSG00000036357 Gpr101 G protein-coupled receptor 101 -1.3197 0.0000
50594 ENSMUSG00000016239 Lonrf3 LON peptidase N-terminal domain and ring finger 3 -1.3191 0.0000
50593 ENSMUSG00000089392 Gm23023 predicted gene, 23023 -1.3189 0.0000
50592 ENSMUSG00000098188 Sowahc sosondowah ankyrin repeat domain family member C -1.3183 0.0000
50591 ENSMUSG00000074217 Misp3 MISP family member 3 -1.3174 0.0000
10 ENSMUSG00000106742 Gm42474 predicted gene 42474 2.3219 0.0275

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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